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[175461_at]

Description AV176564_rc /REP_DB=TREMBL Accession /GB=AV176564 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk514h11 : 3prime end, single read.
Cluster 6grp_total > 94      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 2.1
(-3)
A 		56.7
(3)
A 		40.2
(1.2)
A 		4.8
(-2.7)
A 		55
B 4.1
(-3)
A 		6.2
(-2.4)
A 		25.3
(3)
A 		16.6
(0.5)
A 		21
C 9.6
(-2.9)
A 		47.5
(3)
P 		8.7
(-3)
A 		16.9
(-1.7)
A 		39
avr 5.3
(-3) 		36.8
(3) 		24.7
(0.7) 		12.8
(-1.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.1
(-1)
A 		1.7
(-3)
A 		8.9
(-0.3)
A 		5.7
(-1.5)
A 		17.6
(3)
A 		6.2
(-1.3)
A 		16
B 3.4
(-3)
A 		3.9
(-2.9)
A 		4.3
(-2.8)
A 		10.1
(-1.5)
A 		30.4
(3)
A 		4
(-2.9)
A 		27
C 6.1
(-3)
A 		21.9
(0.4)
A 		9
(-2.4)
A 		27.2
(1.6)
A 		8.8
(-2.4)
A 		33.7
(3)
A 		28
avr 5.5
(-3) 		9.2
(-1.3) 		7.4
(-2.1) 		14.3
(0.9) 		18.9
(3) 		14.6
(1.1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.8
(-2.9)
A 		12.3
(3)
A 		10.5
(2.1)
A 		0.7
(-3)
A 		12
B 1.3
(-3)
A 		1.5
(-2.7)
A 		5.9
(3)
A 		3.5
(-0.1)
A 		5
C 3.2
(-2.8)
A 		13.7
(3)
P 		3
(-2.9)
A 		2.9
(-3)
A 		11
avr 1.8
(-3) 		9.2
(3) 		6.5
(0.8) 		2.4
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-2.1)
A 		0.6
(-3)
A 		1.9
(-1.3)
A 		1.5
(-1.9)
A 		5.3
(3)
A 		1.5
(-1.9)
A 		5
B 1.2
(-2.9)
A 		1.3
(-2.8)
A 		1
(-3)
A 		2.7
(-2.1)
A 		12.3
(3)
A 		1.5
(-2.7)
A 		11
C 2.3
(-3)
A 		6.7
(-0.1)
A 		2.3
(-3)
A 		5.5
(-0.9)
A 		2.9
(-2.6)
A 		11.3
(3)
A 		9
avr 1.6
(-3) 		2.9
(-1.5) 		1.7
(-2.9) 		3.2
(-1.2) 		6.8
(3) 		4.8
(0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21939
Sequence Type Exemplar sequence
Representative Public ID AV176564 NCBI
Target Description AV176564_rc /REP_DB=TREMBL Accession /GB=AV176564 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk514h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072896
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T10C6.13 ENSEMBL cdna:known chromosome:CEL140:V:16044152:16044866:-1 gene:T10C6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16044161-16044441(-) 86.07 100.0
Public Domain and Genome References
Ensembl T10C6.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05834 Hypothetical protein ZK131.7 [Caenorhabditis elegans] emb|CAB05833.1| Hypothetical protein ZK131.3 [Caenorhabditis elegans] emb|CAB05831.1| Hypothetical protein ZK131.2 [Caenorhabditis elegans] emb|CAA97411.1| Hypothetical protein B0035.10 [Caenorhabditis elegans] emb|CAA92733.1| Hypothetical protein F22B3.2 [Caenorhabditis elegans] emb|CAB07653.1| Hypothetical protein T10C6.13 [Caenorhabditis elegans] emb|CAB05209.1| Hypothetical protein F54E12.1 [Caenorhabditis elegans] emb|CAB04057.1| Hypothetical protein F08G2.3 [Caenorhabditis elegans] gb|AAC05102.1| Histone protein 32 [Caenorhabditis elegans] gb|AAK84514.1| Histone protein 49 [Caenorhabditis elegans] gb|AAF98226.1| Histone protein 17 [Caenorhabditis elegans] gb|AAF98231.1| Histone protein 27 [Caenorhabditis elegans] emb|CAA33644.1| Histone protein [Caenorhabditis elegans] gb|AAB00650.1| Histone protein 59 [Caenorhabditis elegans] gb|AAC48033.1| Histone protein 6 [Caenorhabditis elegans] ref|NP_505292.1| HIStone family member (his-27) [Caenorhabditis elegans] ref|NP_505297.1| HIStone family member (his-17) [Caenorhabditis elegans] ref|NP_496890.1| HIStone family member (his-13) [Caenorhabditis elegans] ref|NP_505199.1| HIStone family member (his-6) [Caenorhabditis elegans] ref|NP_501204.1| F55G1.2 [Caenorhabditis elegans] ref|NP_502138.1| HIStone family member (his-55) [Caenorhabditis elegans] ref|NP_502153.1| HIStone family member (his-63) [Caenorhabditis elegans] ref|NP_496899.1| HIStone family member (his-42) [Caenorhabditis elegans] ref|NP_505276.1| HIStone family member (his-49) [Caenorhabditis elegans] ref|NP_502134.1| HIStone family member (his-45) [Caenorhabditis elegans] ref|NP_507033.1| HIStone family member (his-2) [Caenorhabditis elegans] ref|NP_501407.1| HIStone family member (his-32) [Caenorhabditis elegans] ref|NP_496895.1| HIStone family member (his-25) [Caenorhabditis elegans] ref|NP_496894.1| HIStone family member (his-9) [Caenorhabditis elegans] gb|AAG50235.1| histone H3 [Caenorhabditis elegans] pir||HSKW3 histone H3 - Caenorhabditis elegans 5.0E-70
blast P08898 Histone H3 1.0E-69
blast AAH74969 H3/o protein [Homo sapiens] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR007125 EMBL-EBI Histone core 1.6E-29
Sequence
Target Sequence 
>C. ELEGANS:175461_AT
tgagaccgtttcaattcaaaccccaccgaacccaacggccctctttagggccacatacat
atgatccaatcattttcaatccaatttgaataaattattcattattttttaacttattaa
aaaaaaagaacaaaaccaggaaactttagagccatacaatttagtatatttttataatat
caaaatgttttactgtcctcacagaaagtgtcattaatgacgtcatcaattgcctatctg
agt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGACCGTTTCAATTCAAACCCCA 491 567 20 Antisense
CCAACGGCCCTCTTTAGGGCCACAT 218 273 51 Antisense
CCCTCTTTAGGGCCACATACATATG 90 259 58 Antisense
GGGCCACATACATATGATCCAATCA 505 491 67 Antisense
TGATCCAATCATTTTCAATCCAATT 658 565 81 Antisense
AACCAGGAAACTTTAGAGCCATACA 64 141 153 Antisense
GAAACTTTAGAGCCATACAATTTAG 11 337 159 Antisense
ATCAAAATGTTTTACTGTCCTCACA 437 27 198 Antisense
ACTGTCCTCACAGAAAGTGTCATTA 177 97 211 Antisense
TAATGACGTCATCAATTGCCTATCT 146 637 234 Antisense
GACGTCATCAATTGCCTATCTGAGT 685 377 238 Antisense
Sequence Source Affymetrix Proprietary Database