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[175460_at]

Description AV178599_rc /REP_DB=TREMBL Accession /GB=AV178599 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk569a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 63      6grp_total > 60      4grp_total > 21      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 595.4
(1.9)
P 		345.3
(-3)
P 		402.7
(-1.9)
P 		651.5
(3)
P 		306
B 477.2
(-0.5)
P 		585.6
(2.9)
P 		397.6
(-3)
P 		589.5
(3)
P 		192
C 711.1
(2.9)
P 		418.6
(-2)
P 		355.3
(-3)
P 		719.3
(3)
P 		364
avr 594.6
(1.7) 		449.8
(-1.6) 		385.2
(-3) 		653.4
(3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 555.4
(-1.5)
P 		605.2
(3)
P 		603.8
(2.9)
P 		538.9
(-3)
P 		568.2
(-0.3)
P 		591.8
(1.8)
P 		66
B 524.4
(-1.5)
P 		517.3
(-1.6)
P 		525.5
(-1.4)
P 		732.1
(3)
P 		453
(-3)
P 		553.1
(-0.8)
P 		279
C 567.6
(-0.7)
P 		585.7
(-0.3)
P 		664
(1.2)
P 		757.7
(3)
P 		448.7
(-3)
P 		583.6
(-0.4)
P 		309
avr 549.1
(-1.1) 		569.4
(-0.4) 		597.8
(0.5) 		676.2
(3) 		490
(-3) 		576.2
(-0.2) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 216.8
(3)
P 		74.9
(-3)
P 		105.3
(-1.7)
P 		95.4
(-2.1)
P 		142
B 152.2
(3)
P 		144.6
(2.2)
P 		92.1
(-3)
P 		125.6
(0.3)
P 		60
C 235.4
(3)
P 		120.3
(-3)
P 		123.8
(-2.8)
P 		121.3
(-2.9)
P 		115
avr 201.5
(3) 		113.3
(-2.6) 		107.1
(-3) 		114.1
(-2.6) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 102.4
(-3)
P 		215.2
(3)
P 		131.5
(-1.5)
P 		136.7
(-1.2)
P 		171.5
(0.7)
P 		144.1
(-0.8)
P 		113
B 182.5
(1.2)
P 		172.2
(0.4)
P 		127.6
(-3)
P 		193.9
(2.1)
P 		184.1
(1.3)
P 		206.3
(3)
P 		79
C 210.4
(3)
P 		178.7
(0.1)
P 		169
(-0.8)
P 		152.4
(-2.3)
P 		145.2
(-3)
P 		195.4
(1.6)
P 		65
avr 165.1
(-0.1) 		188.7
(3) 		142.7
(-3) 		161
(-0.6) 		166.9
(0.2) 		181.9
(2.1) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21944
Sequence Type Exemplar sequence
Representative Public ID AV178599 NCBI
Target Description AV178599_rc /REP_DB=TREMBL Accession /GB=AV178599 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk569a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171543 NCBI Caenorhabditis elegans C55A6.10 (C55A6.10) mRNA, complete cds. 11/11 None
GENEFINDER00000029783 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11507950:11510790:1 10/11 None
C55A6.10 ENSEMBL cdna:known chromosome:CEL140:V:11507943:11510800:1 gene:C55A6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029769 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11510510-11510790(+) 99.64 99.64
Public Domain and Genome References
Gene Title
Ensembl C55A6.10
Entrez Gene 179581 Entrez gene
SwissProt Q8WQF9 EMBL-EBI
WormBase CE29732 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587532_AT similar to Protein C12orf4 cfa
CANINE_2:CFA.10332.1.S1_AT similar to Protein C12orf4 cfa
CANINE_2:CFA.20553.1.S1_S_AT similar to Protein C12orf4 cfa
DROSOPHILA_2:1627415_AT dm
DROSGENOME1:154402_AT dm
CHICKEN:GGA.8936.1.S1_AT similar to chromosome 12 open reading frame 4 gga
CHICKEN:GGAAFFX.11395.1.S1_AT similar to chromosome 12 open reading frame 4 gga
HG-U133_PLUS_2:218374_S_AT chromosome 12 open reading frame 4 hs
HG-U133A:218374_S_AT chromosome 12 open reading frame 4 hs
HG-FOCUS:218374_S_AT chromosome 12 open reading frame 4 hs
HG-U133A_2:218374_S_AT chromosome 12 open reading frame 4 hs
HU35KSUBA:RC_AA478975_AT chromosome 12 open reading frame 4 hs
HU35KSUBD:RC_H96867_AT chromosome 12 open reading frame 4 hs
U133_X3P:G9966846_3P_A_AT chromosome 12 open reading frame 4 hs
U133_X3P:HS.296198.0.S2_3P_AT chromosome 12 open reading frame 4 hs
HG-U133_PLUS_2:222613_AT chromosome 12 open reading frame 4 hs
HG-U133B:222613_AT chromosome 12 open reading frame 4 hs
HG-U95B:59637_AT chromosome 12 open reading frame 4 hs
HG-U95C:65427_AT chromosome 12 open reading frame 4 hs
MG-U74BV2:162993_AT DNA segment, Chr 6, Wayne State University 163, expressed mm
MOE430A:1449437_AT DNA segment, Chr 6, Wayne State University 163, expressed mm
MOUSE430A_2:1449437_AT DNA segment, Chr 6, Wayne State University 163, expressed mm
MOUSE430_2:1449437_AT DNA segment, Chr 6, Wayne State University 163, expressed mm
MU19KSUBB:TC34223_AT DNA segment, Chr 6, Wayne State University 163, expressed (D6Wsu163e), mRNA mm
RAE230B:1394912_AT similar to DNA segment, Chr 6, Wayne State University 163, expressed (predicted) rn
RAT230_2:1394912_AT similar to DNA segment, Chr 6, Wayne State University 163, expressed (predicted) rn
RAE230B:1392816_AT similar to DNA segment, Chr 6, Wayne State University 163, expressed (predicted) rn
RAT230_2:1392816_AT similar to DNA segment, Chr 6, Wayne State University 163, expressed (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAD21703 Hypothetical protein C55A6.10 [Caenorhabditis elegans] ref|NP_741631.1| C55A6.10 [Caenorhabditis elegans] 0.0
blast CAE75265 Hypothetical protein CBG23228 [Caenorhabditis briggsae] 0.0
blast AAF56802 CG9986-PA [Drosophila melanogaster] gb|AAL39695.1| LD27564p [Drosophila melanogaster] ref|NP_651623.1| CG9986-PA [Drosophila melanogaster] 8.0E-45
blast AAF56802 CG9986-PA [Drosophila melanogaster] gb|AAL39695.1| LD27564p [Drosophila melanogaster] ref|NP_651623.1| CG9986-PA [Drosophila melanogaster] 9.0E-43
Sequence
Target Sequence 
>C. ELEGANS:175460_AT
ggaggtgtgcagtggaatggacgtcgaatctcttccccactacaatgtacattttgttct
accatctggcctgtcacctacgatttatactgctataaccaacatgtttccatcgatctt
ccatctggtgcctggagtatcctcctgatttttccgcatttttttaacgcacgttgtttg
tacagtccaagagaaagtgcatgcgatgctattttttctatttgctgccttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTGTGCAGTGGAATGGACGTC 358 517 14 Antisense
GTACATTTTGTTCTACCATCTGGCC 699 459 60 Antisense
GCCTGTCACCTACGATTTATACTGC 340 283 82 Antisense
ATACTGCTATAACCAACATGTTTCC 696 21 100 Antisense
ACCAACATGTTTCCATCGATCTTCC 310 85 111 Antisense
ATCTTCCATCTGGTGCCTGGAGTAT 26 31 129 Antisense
CTGGAGTATCCTCCTGATTTTTCCG 155 241 145 Antisense
TTCCGCATTTTTTTAACGCACGTTG 243 691 165 Antisense
AACGCACGTTGTTTGTACAGTCCAA 97 145 179 Antisense
AAGTGCATGCGATGCTATTTTTTCT 383 159 208 Antisense
TATTTTTTCTATTTGCTGCCTTCAT 300 663 223 Antisense
Sequence Source Affymetrix Proprietary Database