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[175458_at]

Description AU113531_rc /REP_DB=TREMBL Accession /GB=AU113531 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk708g2 : 3prime end, single read.
Cluster 6grp_total > 63      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.2
(-2.4)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		18.4
(3)
A 		17
B 1.6
(-3)
A 		1.6
(-3)
A 		4.5
(-0.9)
A 		9.7
(3)
A 		8
C 1.6
(-2.6)
A 		3.9
(-0.9)
A 		1.1
(-3)
A 		9.1
(3)
A 		8
avr 2.1
(-3) 		2.4
(-2.8) 		2.4
(-2.8) 		12.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.1
(1.4)
A 		3.3
(1.9)
A 		3.7
(3)
A 		2.6
(0)
A 		3.1
(1.4)
A 		1.5
(-3)
A 		2
B 2.4
(2.1)
A 		1.8
(-3)
A 		2.5
(3)
A 		2.4
(2.1)
A 		1.9
(-2.1)
A 		2.3
(1.3)
A 		1
C 1.4
(-3)
A 		1.5
(-2.9)
A 		7.4
(3)
A 		4.5
(0.1)
A 		5.6
(1.2)
A 		2.6
(-1.8)
A 		6
avr 2.3
(-2.5) 		2.2
(-2.8) 		4.5
(3) 		3.2
(-0.3) 		3.5
(0.5) 		2.1
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(-0.9)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2.7
(3)
A 		2
B 0.5
(-2.6)
A 		0.4
(-3)
A 		1
(-0.9)
A 		2.1
(3)
A 		2
C 0.5
(-2.5)
A 		1.1
(0.8)
A 		0.4
(-3)
A 		1.5
(3)
A 		1
avr 0.7
(-2.6) 		0.6
(-3) 		0.6
(-3) 		2.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.6
(-1.5)
A 		1.2
(3)
A 		0.8
(0)
A 		0.7
(-0.8)
A 		0.9
(0.8)
A 		0.4
(-3)
A 		1
B 0.9
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.8
(1)
A 		0.9
(3)
A 		0
C 0.5
(-3)
A 		0.5
(-3)
A 		1.9
(3)
A 		0.9
(-1.3)
A 		1.8
(2.6)
A 		0.9
(-1.3)
A 		1
avr 0.7
(-3) 		0.8
(-1.8) 		1.1
(1.8) 		0.7
(-3) 		1.2
(3) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22122
Sequence Type Exemplar sequence
Representative Public ID AU113531 NCBI
Target Description AU113531_rc /REP_DB=TREMBL Accession /GB=AU113531 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk708g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K10C2.7 ENSEMBL cdna:known chromosome:CEL140:X:6442676:6443396:-1 gene:K10C2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032618 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6442685-6443011(-) 100.0 100.0
Public Domain and Genome References
Ensembl K10C2.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39262 Hypothetical protein K10C2.7 [Caenorhabditis elegans] ref|NP_509081.2| K10C2.7 [Caenorhabditis elegans] 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:175458_AT
aaatcgttcatagcttttccacagaaatgagtccgagtgactgttggaaagaggacgagc
tatatcaccaatacgtttcttgctcaaacaattatggattaacaaatagaaatactctaa
aagagttggacgttctccgtcaaaatcaagacgcaattgtcacctgcttagatcaacaca
tggaatcttctcaaggatgcaacaaaaaaaatcggcacgaagtcgcaacaatcgtgaaca
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGTTCATAGCTTTTCCACAGA 441 117 21 Antisense
GAAATGAGTCCGAGTGACTGTTGGA 277 361 44 Antisense
GAAAGAGGACGAGCTATATCACCAA 220 361 67 Antisense
GAGCTATATCACCAATACGTTTCTT 34 387 77 Antisense
AATACGTTTCTTGCTCAAACAATTA 677 165 90 Antisense
GAGTTGGACGTTCTCCGTCAAAATC 131 395 143 Antisense
ATCAAGACGCAATTGTCACCTGCTT 314 27 165 Antisense
GTCACCTGCTTAGATCAACACATGG 696 465 179 Antisense
ACACATGGAATCTTCTCAAGGATGC 221 109 196 Antisense
AAATCGGCACGAAGTCGCAACAATC 230 119 229 Antisense
CGAAGTCGCAACAATCGTGAACAAA 285 253 238 Antisense
Sequence Source Affymetrix Proprietary Database