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[175457_at]

Description AV176599_rc /REP_DB=TREMBL Accession /GB=AV176599 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk515c4 : 3prime end, single read.
Cluster 6grp_total > 39      4grp_total > 37      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 157.6
(3)
P 		145.5
(2)
A 		88.3
(-3)
A 		108.5
(-1.3)
A 		69
B 118.4
(0.9)
P 		101.2
(-1.9)
A 		94.6
(-3)
A 		131.6
(3)
A 		37
C 100.6
(-3)
P 		128.3
(1)
M 		142.2
(3)
A 		107.9
(-1.9)
A 		42
avr 125.5
(3) 		125
(2.8) 		108.4
(-3) 		116
(-0.3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 194.6
(2.9)
A 		122.3
(-0.8)
M 		88.3
(-2.5)
A 		78.9
(-3)
A 		189.1
(2.6)
A 		197.1
(3)
P 		118
B 204
(3)
P 		156.9
(-0.5)
P 		123.5
(-3)
A 		135.5
(-2.1)
M 		154.4
(-0.7)
M 		185.6
(1.6)
P 		81
C 138
(0.8)
P 		96.8
(-3)
A 		99.2
(-2.8)
M 		119.5
(-0.9)
A 		161.5
(3)
P 		148.5
(1.8)
P 		65
avr 178.9
(3) 		125.3
(-1.3) 		103.7
(-3) 		111.3
(-2.4) 		168.3
(2.2) 		177.1
(2.9) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 57.4
(3)
P 		31.6
(-0.7)
A 		23.1
(-2)
A 		15.9
(-3)
A 		42
B 37.8
(3)
P 		25
(-1.8)
A 		21.9
(-3)
A 		28
(-0.7)
A 		16
C 33.3
(-0.1)
P 		36.9
(0.6)
M 		49.6
(3)
A 		18.2
(-3)
A 		31
avr 42.8
(3) 		31.2
(-0.1) 		31.5
(-0.1) 		20.7
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 35.9
(-0.4)
A 		43.5
(0.8)
M 		19.2
(-3)
A 		20
(-2.9)
A 		57.1
(3)
A 		48
(1.6)
P 		38
B 71
(3)
P 		52.2
(0.2)
P 		30
(-3)
A 		35.9
(-2.1)
M 		62.7
(1.8)
M 		69.2
(2.7)
P 		41
C 51.2
(2.8)
P 		29.5
(-1.8)
A 		25.2
(-2.7)
M 		24
(-3)
A 		52.3
(3)
P 		49.7
(2.4)
P 		28
avr 52.7
(2.1) 		41.7
(0.1) 		24.8
(-3) 		26.6
(-2.7) 		57.4
(3) 		55.6
(2.7) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20284
Sequence Type Exemplar sequence
Representative Public ID AV176599 NCBI
Target Description AV176599_rc /REP_DB=TREMBL Accession /GB=AV176599 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk515c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y63D3A.8 ENSEMBL cdna:known chromosome:CEL140:I:14122312:14126700:1 gene:Y63D3A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14126340-14126621(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y63D3A.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21712 Hypothetical protein Y63D3A.8 [Caenorhabditis elegans] emb|CAB04553.1| Hypothetical protein Y63D3A.8 [Caenorhabditis elegans] ref|NP_493466.1| Y63D3A.8 [Caenorhabditis elegans] 1.0E-178
blast CAE71811 Hypothetical protein CBG18826 [Caenorhabditis briggsae] 1.0E-127
blast NP_494378 K12H6.6a [Caenorhabditis elegans] gb|AAF39936.1| Hypothetical protein K12H6.6a [Caenorhabditis elegans] 1.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
Y63D3A.8 6 7-29,34-52,112-131,191-213,233-255,270-292
Sequence
Target Sequence 
>C. ELEGANS:175457_AT
aaattgggtgaggctcgccaaattttgtagtttgtagtctatagcctcacccaacagatt
ttccaccaaaaatcgacgttttcagtactttttcctgctttttttgccatttttttttct
gtatctaccgtaatacttgttatttattgatttttccccccattttttagccccaaattt
ttaccaaatcactcattccatgtctatcttggccgcgcaccaaagatgcaaactgtcatt
ttgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGGGTGAGGCTCGCCAAATTT 393 113 17 Antisense
GAGGCTCGCCAAATTTTGTAGTTTG 239 405 26 Antisense
TCCACCAAAAATCGACGTTTTCAGT 702 589 78 Antisense
TTTTTTCTGTATCTACCGTAATACT 104 675 129 Antisense
ATCTACCGTAATACTTGTTATTTAT 88 33 139 Antisense
ATTTTTACCAAATCACTCATTCCAT 167 15 193 Antisense
ATCACTCATTCCATGTCTATCTTGG 455 27 204 Antisense
ACTCATTCCATGTCTATCTTGGCCG 692 99 207 Antisense
TCTTGGCCGCGCACCAAAGATGCAA 153 613 223 Antisense
GGCCGCGCACCAAAGATGCAAACTG 567 541 227 Antisense
AAGATGCAAACTGTCATTTTGATGA 441 155 239 Antisense
Sequence Source Affymetrix Proprietary Database