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[175456_at]

Description AU115128_rc /REP_DB=TREMBL Accession /GB=AU115128 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk726b8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 37      4grp_high_8_8 > 09      6grp_total > 17      4grp_total > 23      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 136.8
(3)
P 		97.3
(-1.3)
P 		81.9
(-3)
P 		125.5
(1.8)
P 		55
B 113.5
(1.7)
P 		60
(-2)
M 		45.7
(-3)
A 		131.6
(3)
P 		86
C 142.6
(3)
P 		83.3
(-3)
P 		95.8
(-1.7)
P 		99.7
(-1.3)
P 		59
avr 131
(3) 		80.2
(-2.4) 		74.5
(-3) 		118.9
(1.7) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 98.9
(2.2)
P 		92.5
(1.1)
P 		90.8
(0.8)
P 		70.6
(-2.5)
P 		67.9
(-3)
A 		103.7
(3)
M 		36
B 108.6
(2.2)
P 		100.2
(1.3)
P 		62.8
(-3)
P 		111.5
(2.5)
M 		99.7
(1.2)
P 		115.5
(3)
P 		53
C 118.1
(1.4)
P 		92.6
(-0.6)
P 		138.1
(3)
P 		83.3
(-1.4)
A 		63.1
(-3)
P 		77.6
(-1.8)
P 		75
avr 108.5
(3) 		95.1
(0.5) 		97.2
(0.9) 		88.5
(-0.8) 		76.9
(-3) 		98.9
(1.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 49.8
(3)
P 		21.1
(-2.5)
P 		21.4
(-2.4)
P 		18.4
(-3)
P 		31
B 36.2
(3)
P 		14.8
(-2)
M 		10.6
(-3)
A 		28
(1.1)
P 		26
C 47.2
(3)
P 		23.9
(-1.6)
P 		33.4
(0.3)
P 		16.8
(-3)
P 		30
avr 44.4
(3) 		19.9
(-3) 		21.8
(-2.5) 		21.1
(-2.7) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 18.2
(-2.9)
P 		32.9
(3)
P 		19.8
(-2.2)
P 		17.9
(-3)
P 		20.5
(-2)
A 		25.2
(-0.1)
M 		15
B 37.8
(1.9)
P 		33.4
(0.9)
P 		15.3
(-3)
P 		29.5
(0.1)
M 		40.5
(2.4)
P 		43.1
(3)
P 		28
C 43.8
(3)
P 		28.3
(-0.4)
P 		35.1
(1.1)
P 		16.7
(-3)
A 		20.4
(-2.2)
P 		26
(-0.9)
P 		27
avr 33.3
(3) 		31.5
(2.1) 		23.4
(-2) 		21.4
(-3) 		27.1
(-0.1) 		31.4
(2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175456_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22269
Sequence Type Exemplar sequence
Representative Public ID AU115128 NCBI
Target Description AU115128_rc /REP_DB=TREMBL Accession /GB=AU115128 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk726b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029772 NCBI Caenorhabditis elegans W05H9.4 (W05H9.4) mRNA, complete cds. 11/11 None
W05H9.4 ENSEMBL cdna:known chromosome:CEL140:X:6263605:6266807:1 gene:W05H9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008324 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008328 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6266516-6266797(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05H9.4
Entrez Gene 3565039 Entrez gene
SwissProt Q86MI9 EMBL-EBI
WormBase CE33721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91682 Hypothetical protein W05H9.4 [Caenorhabditis elegans] ref|NP_001024943.1| W05H9.4 [Caenorhabditis elegans] 0.0
blast T26204 hypothetical protein W05H9.2 - Caenorhabditis elegans 0.0
blast CAE61227 Hypothetical protein CBG05026 [Caenorhabditis briggsae] 1.0E-139
Sequence
Target Sequence 
>C. ELEGANS:175456_AT
ggcgtctttcatgtaaatcttgggatgattccggatttgtctgcatcattatacaatttg
ccacttgattaaacatgtttcaaattggaaaaccagtaatttagttaatcataacttatt
ctcatctttctctctccttcatgctgtgcaatcattcccttgcctctctcgaaatgatct
tttacagtaaaaatcatctttattgattttgttcaggtttttttctaaagtgaattgtca
tctgattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGTCTTTCATGTAAATCTTGGGA 72 541 15 Antisense
TGGGATGATTCCGGATTTGTCTGCA 143 555 35 Antisense
GATTCCGGATTTGTCTGCATCATTA 95 433 41 Antisense
GCATCATTATACAATTTGCCACTTG 239 309 57 Antisense
ACAATTTGCCACTTGATTAAACATG 407 115 67 Antisense
TCATAACTTATTCTCATCTTTCTCT 527 619 123 Antisense
TTCATGCTGTGCAATCATTCCCTTG 221 689 152 Antisense
CTTGCCTCTCTCGAAATGATCTTTT 378 219 173 Antisense
CTCTCTCGAAATGATCTTTTACAGT 55 231 178 Antisense
ATCATCTTTATTGATTTTGTTCAGG 620 29 207 Antisense
CTAAAGTGAATTGTCATCTGATTAC 221 225 239 Antisense
Sequence Source Affymetrix Proprietary Database