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[175455_at]

Description AV185320_rc /REP_DB=TREMBL Accession /GB=AV185320 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk676e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 94      6grp_total > 98      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 279
(-0.8)
P 		166.7
(-3)
P 		186.1
(-2.6)
P 		479.3
(3)
P 		313
B 241.7
(-1.8)
P 		196.2
(-2.6)
P 		172.1
(-3)
P 		508.4
(3)
P 		336
C 289
(-1.2)
P 		246.9
(-2.4)
P 		228.2
(-3)
P 		427.5
(3)
P 		199
avr 269.9
(-1.4) 		203.3
(-2.8) 		195.5
(-3) 		471.7
(3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 330.6
(-2)
P 		421.4
(-1.2)
P 		222
(-3)
P 		462.2
(-0.8)
P 		533.5
(-0.2)
P 		884.4
(3)
P 		662
B 471.3
(0.4)
P 		213.2
(-3)
P 		242.5
(-2.6)
P 		397.5
(-0.5)
P 		664.5
(3)
P 		522.4
(1.1)
P 		451
C 494.2
(-0.8)
P 		308.6
(-2.8)
P 		286.1
(-3)
P 		452
(-1.3)
P 		863.9
(3)
P 		772.9
(2.1)
P 		578
avr 432
(-0.7) 		314.4
(-2.2) 		250.2
(-3) 		437.2
(-0.6) 		687.3
(2.5) 		726.6
(3) 		476
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 101.6
(3)
P 		36.2
(-3)
P 		48.6
(-1.9)
P 		70.2
(0.1)
P 		65
B 77.1
(0.3)
P 		48.5
(-2.2)
P 		39.9
(-3)
P 		108.3
(3)
P 		68
C 95.7
(3)
P 		71
(-3)
P 		79.5
(-0.9)
P 		72.1
(-2.7)
P 		25
avr 91.5
(3) 		51.9
(-3) 		56
(-2.4) 		83.5
(1.8) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 60.9
(-2.6)
P 		149.9
(0.6)
P 		48.4
(-3)
P 		117.2
(-0.5)
P 		161
(1)
P 		215.3
(3)
P 		167
B 164
(-0)
P 		71
(-2.7)
P 		58.9
(-3)
P 		105.3
(-1.7)
P 		270
(3)
P 		194.8
(0.9)
P 		211
C 183.2
(0.2)
P 		94.2
(-2.4)
P 		72.8
(-3)
P 		90.9
(-2.5)
P 		279.5
(3)
P 		258.7
(2.4)
P 		207
avr 136
(-0.4) 		105
(-1.5) 		60
(-3) 		104.5
(-1.5) 		236.8
(3) 		222.9
(2.5) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20197
Sequence Type Exemplar sequence
Representative Public ID AV185320 NCBI
Target Description AV185320_rc /REP_DB=TREMBL Accession /GB=AV185320 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk676e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C48B6.3.1 ENSEMBL cdna:known chromosome:CEL140:I:6923179:6924658:1 gene:C48B6.3 11/11 None
C48B6.3.2 ENSEMBL cdna:known chromosome:CEL140:I:6923181:6924658:1 gene:C48B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6924202-6924579(+) 100.0 100.0
Public Domain and Genome References
Ensembl C48B6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491971 C48B6.3 [Caenorhabditis elegans] gb|AAC48163.1| Hypothetical protein C48B6.3 [Caenorhabditis elegans] 4.0E-99
blast CAE67286 Hypothetical protein CBG12734 [Caenorhabditis briggsae] 1.0E-72
Sequence
Target Sequence 
>C. ELEGANS:175455_AT
tcgggtcttttgaatctcatggtactaatgcataagtagaaatctattatctaacctgaa
aatgctttcgttttcaaaaataaggaaataaattttgaccccaaattcaattttactcag
atttttttacttctgtactggttttctcttctctctcgcttcccctctcctccaaaatac
tctttaattctcgaatttccagttgattttcaaacttttgaatactttactcggagtgat
cttctctttttcgcgaaattttaaattgtttcttattacaagttctagcaagtttcaggg
tttcattctctgtgtagatttcaaccgtcgatcattttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGGTCTTTTGAATCTCATGGTAC 650 605 14 Antisense
TTGACCCCAAATTCAATTTTACTCA 654 685 108 Antisense
TTACTTCTGTACTGGTTTTCTCTTC 376 679 140 Antisense
CTCCTCCAAAATACTCTTTAATTCT 385 235 180 Antisense
TTCTCGAATTTCCAGTTGATTTTCA 397 693 201 Antisense
CTTTACTCGGAGTGATCTTCTCTTT 447 219 238 Antisense
GTGATCTTCTCTTTTTCGCGAAATT 703 483 249 Antisense
ACAAGTTCTAGCAAGTTTCAGGGTT 704 113 291 Antisense
GTTTCAGGGTTTCATTCTCTGTGTA 661 449 305 Antisense
TCTCTGTGTAGATTTCAACCGTCGA 7 613 320 Antisense
GATTTCAACCGTCGATCATTTTGTA 677 425 330 Antisense
Sequence Source Affymetrix Proprietary Database