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[175454_at]

Description AV199008_rc /REP_DB=TREMBL Accession /GB=AV199008 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk539a3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 92      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 65      6grp_total > 84      4grp_total > 17      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1548
1 2 3 4 range
A 557.2
(-3)
P 		808.2
(-1.7)
P 		783.7
(-1.8)
P 		1684.1
(3)
P 		1127
B 394.2
(-3)
P 		893.5
(-1.1)
P 		882.2
(-1.1)
P 		1941.9
(3)
P 		1548
C 409.7
(-3)
P 		948.3
(-0.2)
P 		951.4
(-0.2)
P 		1576.3
(3)
P 		1167
avr 453.7
(-3) 		883.3
(-1) 		872.4
(-1) 		1734.1
(3) 		1280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 883
1 2 3 4 5 6 range
A 730
(-3)
P 		800.7
(-2.4)
P 		1050.4
(-0.2)
P 		1139.8
(0.6)
P 		1410.7
(3)
P 		1334.8
(2.3)
P 		681
B 938.9
(-3)
P 		1088.4
(-0.9)
P 		1368.1
(3)
P 		1255.8
(1.4)
P 		1246.6
(1.3)
P 		1141.5
(-0.2)
P 		429
C 872.9
(-3)
P 		894.8
(-2.8)
P 		962.4
(-2.3)
P 		1185.8
(-0.5)
P 		1613.4
(3)
P 		1038.8
(-1.7)
P 		741
avr 847.3
(-3) 		928
(-2.2) 		1127
(-0.1) 		1193.8
(0.6) 		1423.6
(3) 		1171.7
(0.4) 		576
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 202.9
(-0.7)
P 		175.4
(-3)
P 		204.9
(-0.5)
P 		246.5
(3)
P 		71
B 125.7
(-3)
P 		220.7
(-1)
P 		204.4
(-1.4)
P 		413.8
(3)
P 		288
C 135.6
(-3)
P 		272.6
(1.2)
P 		331.6
(3)
P 		265.8
(1)
P 		196
avr 154.7
(-3) 		222.9
(-0.3) 		247
(0.6) 		308.7
(3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 134.6
(-3)
P 		284.8
(0.1)
P 		228.7
(-1.1)
P 		289.1
(0.2)
P 		425.7
(3)
P 		325
(0.9)
P 		291
B 326.7
(-3)
P 		362.3
(-1.8)
P 		332.2
(-2.8)
P 		332.6
(-2.8)
P 		506.5
(3)
P 		425.7
(0.3)
P 		180
C 323.5
(-1.2)
P 		273
(-2.3)
P 		244.9
(-2.9)
P 		238.5
(-3)
P 		522.1
(3)
P 		347.7
(-0.7)
P 		284
avr 261.6
(-3) 		306.7
(-1.8) 		268.6
(-2.8) 		286.7
(-2.3) 		484.8
(3) 		366.1
(-0.2) 		223
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175454_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22319
Sequence Type Exemplar sequence
Representative Public ID AV199008 NCBI
Target Description AV199008_rc /REP_DB=TREMBL Accession /GB=AV199008 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk539a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171822 NCBI Caenorhabditis elegans H18N23.2b (H18N23.2) mRNA, complete cds. 11/11 None
H18N23.2b ENSEMBL cdna:known chromosome:CEL140:X:17622626:17628155:-1 gene:H18N23.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181788 3 1 NM_171822 175454_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17622695-17622981(-) 100.0 100.0
Public Domain and Genome References
Ensembl H18N23.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69103 Hypothetical protein H18N23.2b [Caenorhabditis elegans] ref|NP_741955.2| H18N23.2b [Caenorhabditis elegans] 0.0
blast AAZ91346 Hypothetical protein H18N23.2c [Caenorhabditis elegans] 1.0E-171
blast NP_001024738 H18N23.2c [Caenorhabditis elegans] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:175454_AT
aatatttgttcatgtgaatcttgagattattatttctaattgtttaaaatattgattttt
gaactacttggattcaaaatcatttcccacccttctatatatacaccttgtcagtagtaa
tatgtattaagaacaaataacttgtattgtttaattgattgagattattaattaccacag
ttccatctatttttgttccaaattgttgcgccatcggtgtaattgatgaaccatcgacac
acacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATTTGTTCATGTGAATCTTGAG 384 173 17 Antisense
GAATCTTGAGATTATTATTTCTAAT 128 329 32 Antisense
CCACCCTTCTATATATACACCTTGT 604 273 103 Antisense
TATATACACCTTGTCAGTAGTAATA 429 655 114 Antisense
GAGATTATTAATTACCACAGTTCCA 536 397 177 Antisense
ATTACCACAGTTCCATCTATTTTTG 277 13 187 Antisense
AGTTCCATCTATTTTTGTTCCAAAT 625 63 195 Antisense
TGTTCCAAATTGTTGCGCCATCGGT 356 563 210 Antisense
ATTGTTGCGCCATCGGTGTAATTGA 600 3 218 Antisense
GCGCCATCGGTGTAATTGATGAACC 621 287 224 Antisense
TTGATGAACCATCGACACACACTTC 441 703 239 Antisense
Sequence Source Affymetrix Proprietary Database