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[175452_at]

Description AU114524_rc /REP_DB=TREMBL Accession /GB=AU114524 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 13      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 22      6grp_total > 23      4grp_total > 20      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1814
1 2 3 4 range
A 2069.5
(-0.5)
P 		2238.4
(0.1)
P 		1321.5
(-3)
P 		3111.6
(3)
P 		1790
B 1925.3
(-0.5)
P 		1915.4
(-0.5)
P 		1298
(-3)
P 		2796.6
(3)
P 		1499
C 2027.2
(-0.4)
P 		1997.7
(-0.5)
P 		1417.3
(-3)
P 		2813.6
(3)
P 		1396
avr 2007.3
(-0.5) 		2050.5
(-0.3) 		1345.6
(-3) 		2907.3
(3) 		1562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1574
1 2 3 4 5 6 range
A 2145.2
(3)
P 		1863.1
(1.8)
P 		2094
(2.8)
P 		1450.9
(-0.1)
P 		1070.3
(-1.7)
P 		780.8
(-3)
P 		1364
B 2242.9
(3)
P 		1962.4
(1.6)
P 		1447.8
(-0.9)
P 		1231.5
(-1.9)
P 		1013
(-3)
P 		1086.7
(-2.6)
P 		1230
C 1885.8
(2.6)
P 		1975.8
(3)
P 		1409.2
(0.4)
P 		1596.5
(1.3)
P 		997.3
(-1.5)
P 		669
(-3)
P 		1307
avr 2091.3
(3) 		1933.8
(2.2) 		1650.3
(0.9) 		1426.3
(-0.2) 		1026.9
(-2.1) 		845.5
(-3) 		1246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 453
1 2 3 4 range
A 753.5
(3)
P 		485.9
(-0.9)
P 		345.5
(-3)
P 		455.5
(-1.4)
P 		408
B 614
(3)
P 		473.1
(0.3)
P 		300.8
(-3)
P 		595.9
(2.7)
P 		313
C 671.1
(3)
P 		574.3
(0)
P 		494
(-2.4)
P 		474.4
(-3)
P 		197
avr 679.5
(3) 		511.1
(-0.4) 		380.1
(-3) 		508.6
(-0.4) 		299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 590
1 2 3 4 5 6 range
A 395.5
(-0.4)
P 		662.6
(3)
P 		456
(0.4)
P 		368
(-0.7)
P 		323
(-1.3)
P 		190.1
(-3)
P 		473
B 780.4
(3)
P 		653.2
(1.3)
P 		351.6
(-2.7)
P 		326.2
(-3)
P 		411.6
(-1.9)
P 		405.2
(-2)
P 		454
C 699
(3)
P 		602.9
(1.8)
P 		358.7
(-1.3)
P 		321.1
(-1.8)
P 		322.7
(-1.8)
P 		224
(-3)
P 		475
avr 625
(2.8) 		639.6
(3) 		388.8
(-1.1) 		338.4
(-1.9) 		352.4
(-1.7) 		273.1
(-3) 		367
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20616
Sequence Type Exemplar sequence
Representative Public ID AU114524 NCBI
Target Description AU114524_rc /REP_DB=TREMBL Accession /GB=AU114524 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063614 NCBI Caenorhabditis elegans M176.5 (M176.5) mRNA, complete cds. 11/11 None
M176.5 ENSEMBL cdna:known chromosome:CEL140:II:9426214:9427646:-1 gene:M176.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025014 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9426220-9426489(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M176.5
Entrez Gene 174497 Entrez gene
SwissProt Q21548 EMBL-EBI
WormBase CE28947 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01654 Hypothetical protein M176.5 [Caenorhabditis elegans] ref|NP_496015.1| M176.5 [Caenorhabditis elegans] 1.0E-106
blast CAE67811 Hypothetical protein CBG13391 [Caenorhabditis briggsae] 8.0E-80
Sequence
Target Sequence 
>C. ELEGANS:175452_AT
ggatcaaatctatgagggtcgacacaaacttcacgatatgcacgtcactaattgtatcta
gattcttacaattttacaatttcaaatttactttaaatttttctttcgttgttctctcaa
ttttcacatttctttcatcctgttagcttattgtttctttcgctagaatttcagatattc
cttggatattgttttgcgtgccaatcactaattcacttcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCAAATCTATGAGGGTCGACAC 550 509 30 Antisense
GAGGGTCGACACAAACTTCACGATA 379 401 43 Antisense
AACTTCACGATATGCACGTCACTAA 391 139 56 Antisense
TGCACGTCACTAATTGTATCTAGAT 154 575 68 Antisense
GTATCTAGATTCTTACAATTTTACA 171 453 83 Antisense
TTCTTTCGTTGTTCTCTCAATTTTC 136 691 130 Antisense
TTCACATTTCTTTCATCCTGTTAGC 141 687 152 Antisense
TCCTGTTAGCTTATTGTTTCTTTCG 544 591 167 Antisense
ATTCCTTGGATATTGTTTTGCGTGC 587 7 206 Antisense
GATATTGTTTTGCGTGCCAATCACT 261 427 214 Antisense
GTGCCAATCACTAATTCACTTCCTC 111 479 227 Antisense
Sequence Source Affymetrix Proprietary Database