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[175450_at]

Description AU114038_rc /REP_DB=TREMBL Accession /GB=AU114038 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk714e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 61      4grp_high_8_8 > 51      6grp_highest_nonorm > 53      6grp_total > 60      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 608.5
(3)
P 		558
(2.2)
P 		518.6
(1.7)
P 		206.8
(-3)
M 		402
B 625.7
(3)
P 		590.7
(2.5)
P 		557.4
(2)
P 		219.8
(-3)
P 		406
C 657.3
(3)
P 		536.1
(1.1)
P 		577
(1.7)
P 		275.3
(-3)
P 		382
avr 630.5
(3) 		561.6
(2) 		551
(1.8) 		234
(-3) 		397

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1094
1 2 3 4 5 6 range
A 506.5
(-3)
P 		677.1
(-1.4)
P 		1138.4
(2.8)
P 		1162.4
(3)
P 		545.7
(-2.6)
P 		551
(-2.6)
P 		656
B 1013.5
(-0.2)
P 		684
(-2.1)
P 		1565.5
(3)
P 		1320.4
(1.6)
P 		519.3
(-3)
P 		647.2
(-2.3)
P 		1046
C 560.8
(-2.5)
P 		721.1
(-1.6)
P 		980
(-0.1)
P 		1536.8
(3)
P 		471.9
(-3)
P 		716.8
(-1.6)
P 		1065
avr 693.6
(-1.7) 		694.1
(-1.7) 		1228
(2.2) 		1339.9
(3) 		512.3
(-3) 		638.3
(-2.1) 		828
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 221.5
(3)
P 		121.1
(-0.2)
P 		135.6
(0.3)
P 		30.3
(-3)
M 		191
B 199.5
(3)
P 		145.9
(0.9)
P 		129.2
(0.2)
P 		46.8
(-3)
P 		153
C 217.6
(3)
P 		154.1
(0.8)
P 		201.1
(2.4)
P 		46.4
(-3)
P 		171
avr 212.9
(3) 		140.4
(0.5) 		155.3
(1) 		41.2
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 93.4
(-3)
P 		240.8
(1.4)
P 		247.9
(1.6)
P 		294.8
(3)
P 		164.7
(-0.9)
P 		134.2
(-1.8)
P 		201
B 352.7
(2)
P 		227.7
(-2.4)
P 		380.2
(3)
P 		349.7
(1.9)
P 		211
(-3)
P 		241.3
(-1.9)
P 		169
C 207.9
(-0.9)
P 		220
(-0.4)
P 		249.4
(0.7)
P 		309
(3)
P 		152.7
(-3)
P 		240
(0.4)
P 		156
avr 218
(-1.2) 		229.5
(-0.7) 		292.5
(1.9) 		317.8
(3) 		176.1
(-3) 		205.2
(-1.8) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21448
Sequence Type Exemplar sequence
Representative Public ID AU114038 NCBI
Target Description AU114038_rc /REP_DB=TREMBL Accession /GB=AU114038 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk714e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069257 NCBI Caenorhabditis elegans F56D5.6 (F56D5.6) mRNA, complete cds. 11/11 None
F56D5.6 ENSEMBL cdna:known chromosome:CEL140:IV:9401966:9412630:1 gene:F56D5.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9409281-9412454(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D5.6
Entrez Gene 177773 Entrez gene
SwissProt Q20881 EMBL-EBI
WormBase CE33797 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93500 Hypothetical protein F56D5.6 [Caenorhabditis elegans] ref|NP_501658.2| F56D5.6 [Caenorhabditis elegans] 0.0
blast CAE74007 Hypothetical protein CBG21650 [Caenorhabditis briggsae] 3.0E-37
blast NP_703434 hypothetical protein [Plasmodium falciparum 3D7] emb|CAD51454.1| hypothetical protein [Plasmodium falciparum 3D7] 1.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501658.2 1 7-28
F56D5.6 1 7-28
Sequence
Target Sequence 
>C. ELEGANS:175450_AT
attcaaccagcagaccctgaaactccatccaaaccagtcgttcgaggtgggcgaatagga
agtggagttcaaccggattctgcaacacaacacaacattcttcttcaatttatcacaatt
tctctaattttattgtttgtctaattactatgtccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAACCAGCAGACCCTGAAACTC 136 11 107 Antisense
CTCCATCCAAACCAGTCGTTCGAGG 382 235 129 Antisense
CAAACCAGTCGTTCGAGGTGGGCGA 110 183 136 Antisense
GAGGTGGGCGAATAGGAAGTGGAGT 43 403 150 Antisense
GAGTTCAACCGGATTCTGCAACACA 549 397 171 Antisense
ACCGGATTCTGCAACACAACACAAC 168 89 178 Antisense
GCAACACAACACAACATTCTTCTTC 537 319 188 Antisense
ACAACATTCTTCTTCAATTTATCAC 141 113 198 Antisense
CTTCAATTTATCACAATTTCTCTAA 109 217 209 Antisense
ATTTCTCTAATTTTATTGTTTGTCT 239 17 224 Antisense
TTGTTTGTCTAATTACTATGTCCCT 698 703 239 Antisense
Sequence Source Affymetrix Proprietary Database