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[175449_s_at]

Description AU115007_rc /REP_DB=TREMBL Accession /GB=AU115007 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk724g12 : 3prime end, single read.
Cluster 6grp_total > 16      4grp_total > 48      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 7.5
(-3)
A 		199
(1.5)
P 		264.6
(3)
P 		47
(-2.1)
A 		257
B 28
(-2.9)
A 		162.4
(0.1)
P 		290.8
(3)
P 		23.1
(-3)
A 		268
C 36.5
(-3)
A 		163.7
(-0.7)
P 		362.3
(3)
P 		80.5
(-2.2)
A 		326
avr 24
(-3) 		175
(0.2) 		305.9
(3) 		50.2
(-2.4) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 920
1 2 3 4 5 6 range
A 769.1
(3)
P 		507.4
(0.9)
P 		85
(-2.4)
P 		28.4
(-2.9)
A 		51.3
(-2.7)
A 		10.3
(-3)
A 		759
B 681.3
(3)
P 		549.2
(1.8)
P 		75.1
(-2.4)
P 		73.7
(-2.4)
A 		51.1
(-2.6)
P 		3.4
(-3)
A 		678
C 922.9
(3)
P 		601.1
(0.9)
P 		129.4
(-2.2)
P 		7.8
(-3)
A 		47.7
(-2.7)
A 		40.3
(-2.8)
A 		915
avr 791.1
(3) 		552.6
(1.1) 		96.5
(-2.4) 		36.6
(-2.9) 		50
(-2.8) 		18
(-3) 		773
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 2.7
(-3)
A 		43.2
(0.7)
P 		69.2
(3)
P 		6.9
(-2.6)
A 		67
B 8.9
(-2.6)
A 		40.1
(0.4)
P 		67.4
(3)
P 		4.9
(-3)
A 		63
C 12.1
(-3)
A 		47.1
(-1.2)
P 		126.3
(3)
P 		13.6
(-2.9)
A 		114
avr 7.9
(-3) 		43.5
(-0.3) 		87.6
(3) 		8.5
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 141.8
(1.7)
P 		180.5
(3)
P 		18.5
(-2.5)
P 		7.2
(-2.8)
A 		15.5
(-2.6)
A 		2.5
(-3)
A 		178
B 237.1
(3)
P 		182.8
(1.6)
P 		18.2
(-2.6)
P 		19.5
(-2.5)
A 		20.8
(-2.5)
P 		1.3
(-3)
A 		236
C 342.1
(3)
P 		183.4
(0.2)
P 		32.9
(-2.4)
P 		1.6
(-3)
A 		15.4
(-2.8)
A 		13.5
(-2.8)
A 		341
avr 240.3
(3) 		182.2
(1.5) 		23.2
(-2.6) 		9.4
(-2.9) 		17.2
(-2.7) 		5.8
(-3) 		235
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175449_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21736
Sequence Type Exemplar sequence
Representative Public ID AU115007 NCBI
Target Description AU115007_rc /REP_DB=TREMBL Accession /GB=AU115007 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk724g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064296 NCBI Caenorhabditis elegans Y38E10A.14 (Y38E10A.14) mRNA, complete cds. 11/11 None
SNAP00000017440 ENSEMBL cdna:SNAP chromosome:CEL140:II:12623189:12623572:-1 11/11 None
GENEFINDER00000017458 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12623189:12623572:-1 11/11 None
Y38E10A.14 ENSEMBL cdna:known chromosome:CEL140:II:12623189:12623572:-1 gene:Y38E10A.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016031 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7571625-7571900(+) 100.0 100.0
chrII:12623171-12623446(-) 99.27 99.27
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.14
Entrez Gene 174896 Entrez gene
SwissProt Q9NAJ7 EMBL-EBI
WormBase CE21594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54405 Hypothetical protein Y38E10A.14 [Caenorhabditis elegans] ref|NP_496697.1| Y38E10A.14 [Caenorhabditis elegans] 6.0E-70
Sequence
Target Sequence 
>C. ELEGANS:175449_S_AT
ggatggtcatcaaaagagaactacagtggcctgggatggtcaaggaacaattcgtgacga
aacaaagtcgaacataattaaattaacctatctttacccattcccatcttgtggagccgg
gagtgtacgagaactcgtacctttctcttcataccattcctttattgtgactcatagcac
ttttaatatcacaatgattgccttgcaatctaagtgcattcttccccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGTCATCAAAAGAGAACTACA 110 515 30 Antisense
TGGGATGGTCAAGGAACAATTCGTG 152 553 61 Antisense
ATTCCCATCTTGTGGAGCCGGGAGT 445 9 129 Antisense
ATCTTGTGGAGCCGGGAGTGTACGA 570 15 135 Antisense
GAGCCGGGAGTGTACGAGAACTCGT 276 385 143 Antisense
TACGAGAACTCGTACCTTTCTCTTC 537 647 155 Antisense
TCTCTTCATACCATTCCTTTATTGT 620 611 173 Antisense
ATACCATTCCTTTATTGTGACTCAT 249 23 180 Antisense
TATTGTGACTCATAGCACTTTTAAT 474 663 192 Antisense
ATCACAATGATTGCCTTGCAATCTA 494 27 217 Antisense
TGCAATCTAAGTGCATTCTTCCCCC 459 575 233 Antisense
Sequence Source Affymetrix Proprietary Database