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[175448_at]

Description AV183658_rc /REP_DB=TREMBL Accession /GB=AV183658 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk654e10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 68      4grp_high_8_8 > 18      6grp_total > 79      4grp_total > 30      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 218.7
(3)
P 		121.3
(-0.7)
P 		61.2
(-3)
A 		217.1
(2.9)
P 		158
B 187.4
(3)
P 		140.4
(-0.6)
P 		108.7
(-3)
P 		177
(2.2)
P 		79
C 262.9
(3)
P 		157.8
(-1.2)
P 		111.2
(-3)
P 		199.6
(0.5)
P 		152
avr 223
(3) 		139.8
(-0.9) 		93.7
(-3) 		197.9
(1.8) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 125.8
(-3)
A 		264.9
(0.6)
P 		138.4
(-2.7)
P 		148.3
(-2.4)
P 		228.6
(-0.3)
P 		357.4
(3)
P 		232
B 187.5
(0.3)
P 		148.2
(-1.9)
P 		132.4
(-2.8)
P 		174.8
(-0.4)
P 		128
(-3)
P 		236
(3)
P 		108
C 184.7
(-1)
P 		144.2
(-2.6)
P 		134.7
(-3)
P 		152.4
(-2.3)
P 		196.4
(-0.6)
P 		287
(3)
P 		152
avr 166
(-1.8) 		185.8
(-1.1) 		135.2
(-3) 		158.5
(-2.1) 		184.3
(-1.1) 		293.5
(3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 79.6
(3)
P 		26.3
(-2)
P 		16
(-3)
A 		31.8
(-1.5)
P 		64
B 59.8
(3)
P 		34.7
(-1.4)
P 		25.2
(-3)
P 		37.7
(-0.8)
P 		35
C 87
(3)
P 		45.4
(-1.7)
P 		38.8
(-2.4)
P 		33.7
(-3)
P 		53
avr 75.5
(3) 		35.5
(-1.9) 		26.7
(-3) 		34.4
(-2.1) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 23.2
(-3)
A 		94.2
(3)
P 		30.1
(-2.4)
P 		37.6
(-1.8)
P 		69
(0.9)
P 		87
(2.4)
P 		71
B 65.2
(0.6)
P 		49.3
(-1.2)
P 		32.1
(-3)
P 		46.3
(-1.5)
P 		52
(-0.9)
P 		88
(3)
P 		56
C 68.5
(0.5)
P 		44
(-1.8)
P 		34.3
(-2.7)
P 		30.7
(-3)
P 		63.5
(0)
P 		96.1
(3)
P 		65
avr 52.3
(-0.9) 		62.5
(0.1) 		32.2
(-3) 		38.2
(-2.4) 		61.5
(0) 		90.4
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21411
Sequence Type Exemplar sequence
Representative Public ID AV183658 NCBI
Target Description AV183658_rc /REP_DB=TREMBL Accession /GB=AV183658 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk654e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182288 NCBI Caenorhabditis elegans Y57G11C.36 (Y57G11C.36) mRNA, complete cds. 11/11 None
Y57G11C.36.1 ENSEMBL cdna:known chromosome:CEL140:IV:14771389:14773200:-1 gene:Y57G11C.36 11/11 None
Y57G11C.36.2 ENSEMBL cdna:known chromosome:CEL140:IV:14771424:14773482:-1 gene:Y57G11C.36 11/11 None
Y57G11C.36.3 ENSEMBL cdna:known chromosome:CEL140:IV:14771424:14773482:-1 gene:Y57G11C.36 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003471 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003586 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14771463-14771741(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.36
Entrez Gene 259844 Entrez gene
SwissProt Q8I4C4 EMBL-EBI
WormBase CE32080 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD56258 Hypothetical protein Y57G11C.36 [Caenorhabditis elegans] ref|NP_872088.1| Y57G11C.36 [Caenorhabditis elegans] 0.0
blast CAE73913 Hypothetical protein CBG21522 [Caenorhabditis briggsae] 1.0E-100
blast AAC04421 Hypothetical protein K07H8.9 [Caenorhabditis elegans] ref|NP_501390.1| K07H8.9 [Caenorhabditis elegans] 7.0E-24
Sequence
Target Sequence 
>C. ELEGANS:175448_AT
tcgtcgtttcttcaacacgaaaccacgtccatcataccaagctaataacgaatccaacaa
cgctaacaagtaaccagatgtaattataattacctacaccatccccttattcctgtaatc
atttcttgttaaattatttatgctccattcccccgtttgattgttcatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCGTTTCTTCAACACGAAACCA 587 507 90 Antisense
TCAACACGAAACCACGTCCATCATA 62 631 101 Antisense
CCACGTCCATCATACCAAGCTAATA 102 275 112 Antisense
ATACCAAGCTAATAACGAATCCAAC 675 21 123 Antisense
AACGAATCCAACAACGCTAACAAGT 402 145 136 Antisense
AACAACGCTAACAAGTAACCAGATG 54 133 145 Antisense
TAATTATAATTACCTACACCATCCC 174 633 170 Antisense
TCCCCTTATTCCTGTAATCATTTCT 244 597 191 Antisense
ATTCCTGTAATCATTTCTTGTTAAA 568 7 198 Antisense
TAAATTATTTATGCTCCATTCCCCC 443 641 219 Antisense
ATTCCCCCGTTTGATTGTTCATATT 631 5 236 Antisense
Sequence Source Affymetrix Proprietary Database