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[175447_at]

Description AV177523_rc /REP_DB=TREMBL Accession /GB=AV177523 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk529h12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 19      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_total > 29      4grp_total > 17      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7499
1 2 3 4 range
A 2825.1
(-3)
P 		8256.7
(1.3)
P 		3405.2
(-2.5)
P 		10324
(3)
P 		7499
B 3588.9
(-3)
P 		4310.4
(-2)
P 		4083.5
(-2.3)
P 		7723.8
(3)
P 		4135
C 2883.2
(-3)
P 		3402
(-2.3)
P 		5493.1
(0.5)
P 		7369.1
(3)
P 		4486
avr 3099.1
(-3) 		5323
(-0.5) 		4327.3
(-1.6) 		8472.3
(3) 		5373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5693
1 2 3 4 5 6 range
A 4188.4
(-0.3)
P 		3307.3
(-1.4)
P 		5164
(1)
P 		3420.4
(-1.3)
P 		6663.1
(3)
M 		2135.5
(-3)
P 		4528
B 6480.6
(3)
P 		5203.8
(0.7)
P 		3121.7
(-3)
P 		3099.2
(-3)
P 		4716.3
(-0.1)
P 		5703.7
(1.6)
P 		3381
C 4139.7
(0.9)
P 		5867.1
(3)
P 		2909.5
(-0.6)
P 		969.9
(-3)
P 		5538.6
(2.6)
P 		3435.6
(0)
P 		4897
avr 4936.2
(1.7) 		4792.7
(1.4) 		3731.7
(-0.6) 		2496.5
(-3) 		5639.3
(3) 		3758.3
(-0.6) 		3143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1024
1 2 3 4 range
A 1028.6
(-2.1)
P 		1792.3
(3)
P 		890.2
(-3)
P 		1511.2
(1.1)
P 		902
B 1144.5
(-1.3)
P 		1064.6
(-2)
P 		946.2
(-3)
P 		1645.9
(3)
P 		700
C 954.4
(-3)
P 		978.1
(-2.9)
P 		1914.5
(3)
P 		1242.5
(-1.2)
P 		960
avr 1042.5
(-3) 		1278.3
(0.3) 		1250.3
(-0.1) 		1466.5
(3) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2060
1 2 3 4 5 6 range
A 772.1
(-2)
P 		1176.2
(-0.4)
P 		1124.6
(-0.6)
P 		867.5
(-1.6)
P 		2010.6
(3)
M 		519.9
(-3)
P 		1491
B 2254.9
(3)
P 		1732.1
(0.9)
P 		758
(-3)
P 		820.9
(-2.7)
P 		1916.2
(1.6)
P 		2126.9
(2.5)
P 		1497
C 1534.4
(2)
P 		1790.2
(3)
P 		740.5
(-1)
P 		195
(-3)
P 		1792.2
(3)
P 		1150.1
(0.6)
P 		1597
avr 1520.5
(1.2) 		1566.2
(1.4) 		874.4
(-1.8) 		627.8
(-3) 		1906.3
(3) 		1265.6
(-0) 		1279
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21139
Sequence Type Exemplar sequence
Representative Public ID AV177523 NCBI
Target Description AV177523_rc /REP_DB=TREMBL Accession /GB=AV177523 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk529h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067280
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067280 NCBI Caenorhabditis elegans Y37D8A.14 (Y37D8A.14) mRNA, complete cds. A 
Y37D8A.14.2 ENSEMBL cdna:known chromosome:CEL140:III:12905362:12906491:1 gene:Y37D8A.14 None
Y37D8A.14.1 ENSEMBL cdna:known chromosome:CEL140:III:12905364:12906491:1 gene:Y37D8A.14 None
GENEFINDER00000028800 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12905369:12906278:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12906018-12906412(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cco-2
Ensembl Y37D8A.14
Entrez Gene 176707 Entrez gene
SwissProt P55954 EMBL-EBI
WormBase CE20218 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586749_AT similar to Cytochrome c oxidase polypeptide Va, mitochondrial precursor cfa
CANINE_2:CFA.10174.3.A1_A_AT similar to Cytochrome c oxidase polypeptide Va, mitochondrial precursor cfa
CANINE_2:CFAAFFX.13327.1.S1_AT similar to Cytochrome c oxidase polypeptide Va, mitochondrial precursor cfa
CANINE_2:CFAAFFX.13327.1.S1_S_AT similar to Cytochrome c oxidase polypeptide Va, mitochondrial precursor cfa
DROSOPHILA_2:1639962_A_AT Cytochrome c oxidase subunit Va dm
DROSGENOME1:143899_AT Cytochrome c oxidase subunit Va dm
CHICKEN:GGAAFFX.24362.1.S1_AT similar to mitochondrial cytochrome c oxidase subunit 5a gga
CHICKEN:GGAAFFX.24362.1.S1_S_AT similar to mitochondrial cytochrome c oxidase subunit 5a gga
HG-U133_PLUS_2:203663_S_AT cytochrome c oxidase subunit Va hs
HG-U133A:203663_S_AT cytochrome c oxidase subunit Va hs
HG-FOCUS:203663_S_AT cytochrome c oxidase subunit Va hs
HG-U133A_2:203663_S_AT cytochrome c oxidase subunit Va hs
HG-U133_PLUS_2:217451_AT cytochrome c oxidase subunit Va hs
HG-U133A_2:217451_AT cytochrome c oxidase subunit Va hs
HG-U133A:217451_AT cytochrome c oxidase subunit Va hs
HUGENEFL:M22760_AT cytochrome c oxidase subunit Va hs
U133_X3P:G4758037_3P_A_AT cytochrome c oxidase subunit Va hs
U133_X3P:HS.278595.0.S1_3P_AT cytochrome c oxidase subunit Va hs
U133_X3P:HS.181028.2.S1_3P_AT cytochrome c oxidase subunit Va hs
HG-U133_PLUS_2:229426_AT cytochrome c oxidase subunit Va hs
HG-U133B:229426_AT cytochrome c oxidase subunit Va hs
HG-U95AV2:41223_AT cytochrome c oxidase subunit Va hs
HG-U95E:73621_AT cytochrome c oxidase subunit Va hs
MOUSE430A_2:1415933_A_AT cytochrome c oxidase, subunit Va mm
MOUSE430_2:1415933_A_AT cytochrome c oxidase, subunit Va mm
MOE430A:1415933_A_AT cytochrome c oxidase, subunit Va mm
MOUSE430_2:1448153_AT cytochrome c oxidase, subunit Va mm
MOE430A:1448153_AT cytochrome c oxidase, subunit Va mm
MOUSE430A_2:1448153_AT cytochrome c oxidase, subunit Va mm
MU11KSUBB:X15963_F_AT cytochrome c oxidase, subunit Va mm
MG-U74AV2:161490_AT cytochrome c oxidase, subunit Va mm
MG-U74CV2:171593_AT cytochrome c oxidase, subunit Va mm
MOE430A:1439267_X_AT cytochrome c oxidase, subunit Va mm
MOUSE430A_2:1439267_X_AT cytochrome c oxidase, subunit Va mm
MOUSE430_2:1439267_X_AT cytochrome c oxidase, subunit Va mm
MG-U74AV2:160438_AT cytochrome c oxidase, subunit Va mm
MU11KSUBA:C77730_RC_AT Cytochrome c oxidase, subunit Va, mRNA (cDNA clone MGC:36114 IMAGE:5372849) mm
MU19KSUBA:TC19196_AT Cytochrome c oxidase, subunit Va, mRNA (cDNA clone MGC:36114 IMAGE:5372849) mm
MU19KSUBB:TC33192_F_AT Cytochrome c oxidase, subunit Va, mRNA (cDNA clone MGC:36114 IMAGE:5372849) mm
MU19KSUBB:TC33193_F_AT Cytochrome c oxidase, subunit Va, mRNA (cDNA clone MGC:36114 IMAGE:5372849) mm
RT-U34:X15030_AT cytochrome c oxidase, subunit Va rn
RG-U34A:X15030_AT cytochrome c oxidase, subunit Va rn
RAE230A:1370888_AT cytochrome c oxidase, subunit Va rn
RAT230_2:1370888_AT cytochrome c oxidase, subunit Va rn
RG-U34A:RC_AI104513_AT Cytochrome c oxidase, subunit Va rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4129 cytochrome-c oxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21532 Hypothetical protein Y37D8A.14 [Caenorhabditis elegans] ref|NP_499681.1| Y37D8A.14 [Caenorhabditis elegans] sp|P55954|COX5A_CAEEL Cytochrome c oxidase polypeptide Va, mitochondrial precursor 1.0E-100
blast CAE69553 Hypothetical protein CBG15765 [Caenorhabditis briggsae] 2.0E-93
blast AAL17607 cytochrome c oxidase subunit Va [Rhyzopertha dominica] 4.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR003204 EMBL-EBI Cytochrome c oxidase, subunit Va 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:175447_AT
agctcattctagtcacatcttcagaatctttaattatcagcgaattttgaagtgtttttc
actgggaaaaaaacacgtagtttctttttccaggtcgagccagtgctcaaggagctcgga
atcgacacaccggaacaactcggatacggagagccagaattcttcgtgccagagccggaa
tattggtgggagaagaagtggtacaaggactacggatacgacaaacacccaaatatccaa
atttaaattttccattctgcaaatttagtggctcagtctgtttatttgatttttagaatg
tggatatgataatgtcaccgcgagataacgataaacgtttggatctgactgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCATTCTAGTCACATCTTCAGA 520 79 23 Antisense
TCTAGTCACATCTTCAGAATCTTTA 93 615 30 Antisense
TCAGAATCTTTAATTATCAGCGAAT 459 623 43 Antisense
ATCAGCGAATTTTGAAGTGTTTTTC 615 25 58 Antisense
TAGTTTCTTTTTCCAGGTCGAGCCA 676 611 100 Antisense
GCAAATTTAGTGGCTCAGTCTGTTT 545 317 281 Antisense
GGCTCAGTCTGTTTATTTGATTTTT 514 539 292 Antisense
GTGGATATGATAATGTCACCGCGAG 162 489 322 Antisense
GATAATGTCACCGCGAGATAACGAT 94 423 330 Antisense
GTCACCGCGAGATAACGATAAACGT 310 463 336 Antisense
GATAAACGTTTGGATCTGACTGTTT 199 423 352 Antisense
Sequence Source Affymetrix Proprietary Database