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[175446_at]

Description AV199679_rc /REP_DB=TREMBL Accession /GB=AV199679 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk550a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 51      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 56      6grp_total > 62      4grp_total > 29      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 749
1 2 3 4 range
A 993.2
(0.2)
P 		788.5
(-1.6)
P 		628.9
(-3)
P 		1317.6
(3)
P 		689
B 1245.1
(3)
P 		1043.2
(1.2)
P 		572.8
(-3)
P 		962.2
(0.5)
P 		672
C 1067.1
(3)
P 		613
(-2.5)
P 		568.8
(-3)
P 		901.6
(1)
P 		498
avr 1101.8
(3) 		814.9
(-0.4) 		590.2
(-3) 		1060.5
(2.5) 		512

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3498
1 2 3 4 5 6 range
A 2387.2
(0.8)
P 		856.7
(-1.8)
P 		3640.6
(3)
P 		712.1
(-2)
P 		2405.1
(0.9)
P 		142.8
(-3)
P 		3498
B 2927.4
(1.6)
P 		2799.6
(1)
P 		2970.2
(1.8)
P 		3009.3
(2)
P 		3237.1
(3)
P 		1907.6
(-3)
P 		1330
C 266.3
(-3)
P 		2558.5
(1.7)
P 		744.6
(-2)
P 		3196.3
(3)
P 		798.4
(-1.9)
P 		1574.8
(-0.3)
P 		2930
avr 1860.3
(0.1) 		2071.6
(1.2) 		2451.8
(3) 		2305.9
(2.3) 		2146.9
(1.5) 		1208.4
(-3) 		1243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 361.6
(3)
P 		171.2
(-2.8)
P 		164.4
(-3)
P 		192.9
(-2.1)
P 		197
B 397.1
(3)
P 		257.6
(-0.2)
P 		132.7
(-3)
P 		205.1
(-1.4)
P 		264
C 353.2
(3)
P 		176.3
(-2.3)
P 		198.2
(-1.6)
P 		152
(-3)
P 		201
avr 370.6
(3) 		201.7
(-1.9) 		165.1
(-3) 		183.3
(-2.5) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1280
1 2 3 4 5 6 range
A 440.1
(0.2)
P 		304.7
(-0.9)
P 		792.8
(3)
P 		180.6
(-1.8)
P 		725.8
(2.5)
P 		34.8
(-3)
P 		758
B 1018.6
(0.1)
P 		931.9
(-0.8)
P 		721.3
(-2.9)
P 		797.1
(-2.1)
P 		1315.2
(3)
P 		711.3
(-3)
P 		604
C 98.7
(-3)
P 		780.7
(3)
P 		189.5
(-2.2)
P 		642.8
(1.8)
P 		258.4
(-1.6)
P 		527.2
(0.8)
P 		682
avr 519.1
(-1.3) 		672.4
(1.3) 		567.9
(-0.5) 		540.2
(-1) 		766.5
(3) 		424.4
(-3) 		342
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175446_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21417
Sequence Type Exemplar sequence
Representative Public ID AV199679 NCBI
Target Description AV199679_rc /REP_DB=TREMBL Accession /GB=AV199679 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk550a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199679
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199679 AV199679_rc /REP_DB=TREMBL Accession /GB=AV199679 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk550a12 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:311610-311904(+) 95.36 95.36
chrIV:11106560-11106840(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175446_AT
ttgttccaacgtcgggaattccttgaccgtttgaagagaatctgctttgtccgttttgca
gaggcgtgatgtgtattggaaactgtctccatgctcttccaaccagacgagaatagaata
atagaagggaaggggtttgatggtgataggaatgggggaatccaaatagatattggcgtg
gccttggtgtagcggtttcggcgcacttaggtgaactcctgactcctctgagttcgcaga
aac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTCCAACGTCGGGAATTCCTTG 690 701 20 Antisense
GGGAATTCCTTGACCGTTTGAAGAG 552 401 33 Antisense
AGAGAATCTGCTTTGTCCGTTTTGC 239 69 54 Antisense
GTCCGTTTTGCAGAGGCGTGATGTG 82 475 68 Antisense
ATTGGAAACTGTCTCCATGCTCTTC 618 3 94 Antisense
ATGCTCTTCCAACCAGACGAGAATA 335 43 110 Antisense
GATATTGGCGTGGCCTTGGTGTAGC 425 427 188 Antisense
TGGCCTTGGTGTAGCGGTTTCGGCG 176 537 198 Antisense
TAGCGGTTTCGGCGCACTTAGGTGA 167 599 209 Antisense
CGCACTTAGGTGAACTCCTGACTCC 547 253 221 Antisense
CTGACTCCTCTGAGTTCGCAGAAAC 267 239 238 Antisense
Sequence Source Affymetrix Proprietary Database