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[175445_at] SEC14 (yeast)

Description AV198775_rc /REP_DB=TREMBL Accession /GB=AV198775 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk380e10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 90      6grp_total > 96      4grp_total > 25      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 107.2
(-3)
P 		191.1
(0.5)
P 		192.3
(0.6)
P 		250.8
(3)
P 		144
B 109.4
(-3)
P 		220.2
(2.3)
P 		185.8
(0.7)
P 		234.3
(3)
P 		125
C 80.2
(-3)
P 		162.9
(-0.1)
P 		224.5
(2)
P 		252.3
(3)
P 		172
avr 98.9
(-3) 		191.4
(0.8) 		200.9
(1.2) 		245.8
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 113.3
(-0.2)
P 		98
(-1.9)
P 		128.4
(1.4)
P 		87.6
(-3)
P 		143.4
(3)
P 		127.9
(1.3)
P 		56
B 98.8
(-1.9)
P 		83.6
(-3)
P 		101.9
(-1.7)
P 		144.5
(1.5)
P 		143.7
(1.4)
P 		165.4
(3)
P 		82
C 77.1
(-3)
P 		103.8
(-0.3)
P 		85.2
(-2.2)
P 		107.8
(0.1)
P 		126.1
(1.9)
P 		136.5
(3)
P 		59
avr 96.4
(-2.8) 		95.1
(-3) 		105.2
(-1.7) 		113.3
(-0.7) 		137.7
(2.3) 		143.3
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 39
(-2)
P 		41.5
(-0.9)
P 		50.3
(3)
P 		36.7
(-3)
P 		14
B 34.9
(-3)
P 		54.4
(3)
P 		43.1
(-0.5)
P 		49.9
(1.6)
P 		20
C 26.5
(-3)
P 		46.8
(-0.6)
P 		78.2
(3)
P 		42.5
(-1.1)
P 		52
avr 33.5
(-3) 		47.6
(0.6) 		57.2
(3) 		43
(-0.6) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 20.9
(-3)
P 		34.9
(0.8)
P 		28
(-1.1)
P 		22.2
(-2.7)
P 		43.3
(3)
P 		31.1
(-0.3)
P 		22
B 34.4
(-1.4)
P 		27.8
(-2.5)
P 		24.7
(-3)
P 		38.3
(-0.8)
P 		58.4
(2.5)
P 		61.7
(3)
P 		37
C 28.6
(-1.3)
P 		31.7
(-0.5)
P 		21.7
(-3)
P 		21.7
(-3)
P 		40.8
(1.8)
P 		45.7
(3)
P 		24
avr 28
(-2.2) 		31.5
(-1.2) 		24.8
(-3) 		27.4
(-2.3) 		47.5
(3) 		46.2
(2.7) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21134
Sequence Type Exemplar sequence
Representative Public ID AV198775 NCBI
Target Description AV198775_rc /REP_DB=TREMBL Accession /GB=AV198775 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk380e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066640
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T23G5.2.2 ENSEMBL cdna:known chromosome:CEL140:III:9231331:9236226:-1 gene:T23G5.2 A 
T23G5.2.1 ENSEMBL cdna:known chromosome:CEL140:III:9231331:9236225:-1 gene:T23G5.2 A 
T23G5.2.3 ENSEMBL cdna:known chromosome:CEL140:III:9231346:9236218:-1 gene:T23G5.2 None
GENEFINDER00000022704 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9231641:9236218:-1 None
SNAP00000022700 ENSEMBL cdna:SNAP chromosome:CEL140:III:9234927:9236218:-1 None
NM_066640 NCBI Caenorhabditis elegans T23G5.2 (T23G5.2) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9234704-9234982(-) 93.17 100.0
Public Domain and Genome References
Gene Title SEC14 (yeast)
Ensembl T23G5.2
Entrez Gene 176302 Entrez gene
SwissProt Q03606 EMBL-EBI
WormBase CE01099 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8718.1.S1_AT similar to SEC14-like protein 1 cfa
CHICKEN:GGA.18975.1.S1_AT SEC14-like 1 (S. cerevisiae) gga
CHICKEN:GGAAFFX.24823.1.S1_AT SEC14-like 1 (S. cerevisiae) gga
CHICKEN:GGAAFFX.24823.1.S1_S_AT SEC14-like 1 (S. cerevisiae) gga
HG-U133A:202084_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:202084_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133A_2:202084_S_AT SEC14-like 1 (S. cerevisiae) hs
HU35KSUBC:RC_AA122317_S_AT SEC14-like 1 (S. cerevisiae) hs
HU35KSUBD:RC_H81964_S_AT SEC14-like 1 (S. cerevisiae) hs
HUGENEFL:D67029_AT SEC14-like 1 (S. cerevisiae) hs
U133_X3P:G4506866_3P_A_AT SEC14-like 1 (S. cerevisiae) hs
U133_X3P:HS.75232.0.A2_3P_A_AT SEC14-like 1 (S. cerevisiae) hs
U133_X3P:HS.75232.0.A1_3P_A_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133A_2:202082_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-FOCUS:202082_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:202082_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133A:202082_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133A_2:202083_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:202083_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133A:202083_S_AT SEC14-like 1 (S. cerevisiae) hs
HG-U95AV2:36207_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:221621_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133A_2:221621_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133A:221621_AT SEC14-like 1 (S. cerevisiae) hs
HU35KSUBC:RC_N74438_AT SEC14-like 1 (S. cerevisiae) hs
U133_X3P:G11493406_3P_AT SEC14-like 1 (S. cerevisiae) hs
U133_X3P:HS.50492.0.A1_3P_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133_PLUS_2:240036_AT SEC14-like 1 (S. cerevisiae) hs
HG-U133B:240036_AT SEC14-like 1 (S. cerevisiae) hs
HG-U95B:46888_AT SEC14-like 1 (S. cerevisiae) hs
HG-U95D:70889_AT SEC14-like 1 (S. cerevisiae) hs
HG-U95D:70892_AT SEC14-like 1 (S. cerevisiae) hs
HG-U95D:82992_R_AT SEC14-like 1 (S. cerevisiae) hs
HG-U95C:63680_AT SEC14-like 1 (S. cerevisiae) hs
HG-U95D:85793_AT SEC14-like 1 (S. cerevisiae) hs
MG-U74AV2:95664_AT SEC14-like 1 (S. cerevisiae) mm
MG-U74AV2:95665_AT SEC14-like 1 (S. cerevisiae) mm
MOUSE430_2:1451908_A_AT SEC14-like 1 (S. cerevisiae) mm
MOUSE430A_2:1451908_A_AT SEC14-like 1 (S. cerevisiae) mm
MOE430A:1451908_A_AT SEC14-like 1 (S. cerevisiae) mm
MOE430A:1453412_A_AT SEC14-like 1 (S. cerevisiae) mm
MOUSE430A_2:1453412_A_AT SEC14-like 1 (S. cerevisiae) mm
MOUSE430_2:1453412_A_AT SEC14-like 1 (S. cerevisiae) mm
MU19KSUBA:TC14418_AT SEC14-like 1 (S. cerevisiae) (Sec14l1), mRNA mm
MU19KSUBA:TC14418_G_AT SEC14-like 1 (S. cerevisiae) (Sec14l1), mRNA mm
MU19KSUBB:TC31659_AT SEC14-like 1 (S. cerevisiae) (Sec14l1), mRNA mm
MU19KSUBB:TC33271_AT SEC14-like 1 (S. cerevisiae) (Sec14l1), mRNA mm
MU19KSUBC:TC35123_AT SEC14-like 1 (S. cerevisiae) (Sec14l1), mRNA mm
MU19KSUBC:TC37654_AT SEC14-like 1 (S. cerevisiae) (Sec14l1), mRNA mm
RG-U34C:RC_AI176849_AT similar to SEC14-like 1 rn
RAE230A:1388334_AT similar to SEC14-like 1 rn
RAT230_2:1388334_AT similar to SEC14-like 1 rn
RAE230B:1397946_AT Similar to SEC14-like 1 rn
RAT230_2:1397946_AT Similar to SEC14-like 1 rn
RAE230B:1397334_AT Similar to SEC14-like 1 rn
RAT230_2:1397334_AT Similar to SEC14-like 1 rn
RAE230B:1391790_AT Similar to SEC14-like 1 rn
RAT230_2:1391790_AT Similar to SEC14-like 1 rn
RG-U34B:RC_AI044233_AT Similar to SEC14-like 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79573 Hypothetical protein T23G5.2 [Caenorhabditis elegans] ref|NP_499041.1| T23G5.2 [Caenorhabditis elegans] sp|Q03606|YN02_CAEEL Hypothetical protein T23G5.2 in chromosome III 0.0
blast CAE65258 Hypothetical protein CBG10148 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008273 EMBL-EBI Cellular retinaldehyde-binding/triple function, N-terminal 1.2E-29
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.1E-86
Pfam IPR006797 EMBL-EBI MSF1 1.5E-70
Pfam IPR008273 EMBL-EBI Cellular retinaldehyde-binding/triple function, N-terminal 1.2E-29
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.1E-86
Sequence
Target Sequence 
>C. ELEGANS:175445_AT
ccagttttgacgacggtgcgttgtgattttggttcgacacttgctgatccctttattcat
gttgccgatgttctaggcaccaaatacatatttttatcatgttttagcctgcttttttga
atggtgttctgcttctgtgatgttatttcatatcttttagctcctcctaaatacaacaaa
attcaaattggcagcatgccgtgtttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGTTTTGACGACGGTGCGTTGTG 576 271 47 Antisense
CGGTGCGTTGTGATTTTGGTTCGAC 170 243 60 Antisense
ATTTTGGTTCGACACTTGCTGATCC 180 15 72 Antisense
TGCTGATCCCTTTATTCATGTTGCC 172 583 88 Antisense
ATGTTGCCGATGTTCTAGGCACCAA 387 47 105 Antisense
ATTTTTATCATGTTTTAGCCTGCTT 209 15 136 Antisense
TAGCCTGCTTTTTTGAATGGTGTTC 271 651 151 Antisense
AATGGTGTTCTGCTTCTGTGATGTT 382 163 166 Antisense
TATTTCATATCTTTTAGCTCCTCCT 101 663 190 Antisense
TAGCTCCTCCTAAATACAACAAAAT 557 647 204 Antisense
CAAATTGGCAGCATGCCGTGTTTGC 509 193 230 Antisense
Sequence Source Affymetrix Proprietary Database