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[175444_at]

Description AU114499_rc /REP_DB=TREMBL Accession /GB=AU114499 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 03      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 90      6grp_total > 33      4grp_total > 40      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 176.1
(-3)
P 		397.5
(3)
P 		296.5
(0.3)
P 		238.4
(-1.3)
P 		221
B 224
(-3)
P 		293.9
(-1)
P 		433.7
(3)
P 		330
(0)
P 		210
C 242.5
(-3)
P 		330.9
(-1)
P 		485
(2.6)
P 		501.3
(3)
P 		259
avr 214.2
(-3) 		340.8
(1) 		405.1
(3) 		356.6
(1.5) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 191.5
(-0.4)
P 		223.2
(1.2)
P 		259
(3)
P 		159.2
(-2)
P 		140.3
(-3)
P 		162.9
(-1.9)
P 		119
B 255.5
(3)
P 		170.9
(-1.3)
P 		221.8
(1.3)
P 		162
(-1.8)
P 		153.5
(-2.2)
P 		137.8
(-3)
P 		118
C 231
(2.7)
P 		175.3
(-0.8)
P 		169.2
(-1.2)
P 		139.6
(-3)
P 		236.6
(3)
P 		164.5
(-1.5)
P 		97
avr 226
(3) 		189.8
(0) 		216.7
(2.2) 		153.6
(-3) 		176.8
(-1.1) 		155.1
(-2.9) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 64.1
(0.4)
P 		86.3
(3)
P 		77.5
(2)
P 		34.9
(-3)
P 		51
B 71.4
(-2.8)
P 		72.6
(-2.5)
P 		100.5
(3)
P 		70.3
(-3)
P 		30
C 80.3
(-3)
P 		95.1
(-2)
P 		169
(3)
P 		84.5
(-2.7)
P 		89
avr 71.9
(-2) 		84.7
(-0.5) 		115.7
(3) 		63.2
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 35.3
(-3)
P 		79.4
(3)
P 		56.4
(-0.1)
P 		40.4
(-2.3)
P 		42.3
(-2)
P 		39.7
(-2.4)
P 		44
B 88.9
(3)
P 		56.9
(-1.2)
P 		53.9
(-1.6)
P 		42.9
(-3)
P 		62.4
(-0.5)
P 		51.4
(-1.9)
P 		46
C 85.6
(3)
P 		53.5
(-0.3)
P 		43.1
(-1.4)
P 		28.1
(-3)
P 		76.6
(2.1)
P 		55.1
(-0.2)
P 		58
avr 69.9
(3) 		63.3
(1.8) 		51.1
(-0.4) 		37.1
(-3) 		60.4
(1.3) 		48.7
(-0.9) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21400
Sequence Type Exemplar sequence
Representative Public ID AU114499 NCBI
Target Description AU114499_rc /REP_DB=TREMBL Accession /GB=AU114499 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069941 NCBI Caenorhabditis elegans C42C1.7 (C42C1.7) mRNA, complete cds. 11/11 A 
SNAP00000027945 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12293329:12295408:-1 10/11 None
C42C1.7 ENSEMBL cdna:known chromosome:CEL140:IV:12293212:12301251:-1 gene:C42C1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12293292-12293572(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42C1.7
Entrez Gene 178180 Entrez gene
SwissProt O44963 EMBL-EBI
WormBase CE29224 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_502342 C42C1.7 [Caenorhabditis elegans] gb|AAB97548.2| Hypothetical protein C42C1.7 [Caenorhabditis elegans] 0.0
blast CAE62223 Hypothetical protein CBG06274 [Caenorhabditis briggsae] 0.0
blast AAC48045 Hypothetical protein K09E10.2 [Caenorhabditis elegans] ref|NP_502345.1| K09E10.2 [Caenorhabditis elegans] 0.0
blast NP_502343 C42C1.6 [Caenorhabditis elegans] gb|AAB97542.1| Hypothetical protein C42C1.6 [Caenorhabditis elegans] 5.0E-42
blast NP_502342 C42C1.7 [Caenorhabditis elegans] gb|AAB97548.2| Hypothetical protein C42C1.7 [Caenorhabditis elegans] 1.0E-38
blast CAE62223 Hypothetical protein CBG06274 [Caenorhabditis briggsae] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502342.1 11 13-30,45-67,80-102,142-164,171-188,198-215,273-295,299-317,326-348,363-385,392-414
C42C1.7 11 13-30,45-67,80-102,142-164,171-188,198-215,273-295,299-317,326-348,363-385,392-414
Sequence
Target Sequence 
>C. ELEGANS:175444_AT
tgtccagcccgacacttataagctggcgcgactacgaacagaagcaattgtgaaggaatg
tggatcgaaatgcgagatgattgattacgaaccgttgcttttcaacaaaacatcaaatcg
cttcgaattttttgacaatcgaggatttctctatttcacaggagtcaaccatctgtcagc
acacgggatggaattagttagaccgatctacacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCAGCCCGACACTTATAAGCTG 161 557 13 Antisense
GACACTTATAAGCTGGCGCGACTAC 182 367 23 Antisense
GGCGCGACTACGAACAGAAGCAATT 501 541 37 Antisense
GCGAGATGATTGATTACGAACCGTT 196 291 84 Antisense
GATTACGAACCGTTGCTTTTCAACA 225 421 95 Antisense
AATCGCTTCGAATTTTTTGACAATC 293 169 128 Antisense
ACAATCGAGGATTTCTCTATTTCAC 619 113 147 Antisense
TCTATTTCACAGGAGTCAACCATCT 621 613 162 Antisense
TCAACCATCTGTCAGCACACGGGAT 473 631 177 Antisense
GTCAGCACACGGGATGGAATTAGTT 610 463 187 Antisense
GAATTAGTTAGACCGATCTACACAA 317 325 203 Antisense
Sequence Source Affymetrix Proprietary Database