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[175440_at]

Description AV184696_rc /REP_DB=TREMBL Accession /GB=AV184696 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk668c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 50      6grp_total > 29      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 03      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 639.1
(3)
P 		461.9
(-1.6)
P 		458.9
(-1.7)
P 		406.6
(-3)
P 		233
B 677.5
(3)
P 		425.8
(-2.3)
P 		415.8
(-2.5)
P 		390.3
(-3)
P 		287
C 603.7
(3)
P 		497.8
(0.1)
P 		535.3
(1.1)
P 		386.2
(-3)
P 		218
avr 640.1
(3) 		461.8
(-1.4) 		470
(-1.2) 		394.4
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 709.6
(3)
P 		581.7
(1.1)
P 		340.8
(-2.5)
P 		306.1
(-3)
P 		568.3
(0.9)
P 		488.5
(-0.3)
P 		404
B 606.2
(3)
P 		486.4
(0.2)
P 		353.7
(-3)
P 		439.4
(-1)
P 		451.3
(-0.7)
P 		525.5
(1.1)
P 		253
C 631.5
(3)
P 		484
(-1.1)
P 		431.1
(-2.6)
P 		416.3
(-3)
P 		484.9
(-1.1)
P 		429.5
(-2.6)
P 		215
avr 649.1
(3) 		517.4
(0.1) 		375.2
(-3) 		387.3
(-2.7) 		501.5
(-0.2) 		481.2
(-0.7) 		274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 232.7
(3)
P 		100.3
(-1.6)
P 		120
(-0.9)
P 		59.5
(-3)
P 		173
B 216
(3)
P 		105.2
(-2)
P 		96.3
(-2.4)
P 		83.2
(-3)
P 		133
C 199.8
(3)
P 		143.1
(0.5)
P 		186.6
(2.4)
P 		65.1
(-3)
P 		135
avr 216.2
(3) 		116.2
(-1.1) 		134.3
(-0.3) 		69.3
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 130.8
(-0.4)
P 		206.9
(3)
P 		74.2
(-3)
P 		77.6
(-2.8)
P 		171.5
(1.4)
P 		118.9
(-1)
P 		133
B 210.9
(3)
P 		161.9
(0.6)
P 		85.9
(-3)
P 		116.4
(-1.5)
P 		183.4
(1.7)
P 		196
(2.3)
P 		125
C 234.1
(3)
P 		147.7
(-0.4)
P 		109.7
(-2)
P 		83.7
(-3)
P 		156.9
(-0.1)
P 		143.8
(-0.6)
P 		150
avr 191.9
(3) 		172.2
(1.8) 		89.9
(-3) 		92.6
(-2.8) 		170.6
(1.7) 		152.9
(0.7) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21369
Sequence Type Exemplar sequence
Representative Public ID AV184696 NCBI
Target Description AV184696_rc /REP_DB=TREMBL Accession /GB=AV184696 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk668c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171393 NCBI Caenorhabditis elegans WASP (actin cytoskeleton modulator) homolog family member (wsp-1) (wsp-1) mRNA, complete cds. 11/11 None
C07G1.4a ENSEMBL cdna:known chromosome:CEL140:IV:8188888:8198932:-1 gene:C07G1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177616 2 1 NM_171393 175440_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8188914-8189247(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07G1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84881 Wasp (actin cytoskeleton modulator) homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_741459.2| WASP (actin cytoskeleton modulator) homolog family member (wsp-1) [Caenorhabditis elegans] 0.0
blast AAN84882 Wasp (actin cytoskeleton modulator) homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_741460.2| WASP (actin cytoskeleton modulator) homolog family member (wsp-1) [Caenorhabditis elegans] 1.0E-125
blast T15446 hypothetical protein C07G1.4 - Caenorhabditis elegans 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR001960 EMBL-EBI WH1 7.0E-10
Pfam IPR003124 EMBL-EBI Actin-binding WH2 2.9E-6
Pfam IPR003124 EMBL-EBI Actin-binding WH2 7.4E-7
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 6.2E-17
Sequence
Target Sequence 
>C. ELEGANS:175440_AT
gacgaatttgtaaaacttgtgcatttagtttttttttttctccaaatcagtgcctattcc
gtgtgaatttctcttcgtaagcccccttccacacacccgaaataccaacaaacttttaaa
actcaaccagtcttcttgtttttctcccgtagatttttctgtgatgctcccctctcatcc
aaaaccattgtccctttttagacttacagcagaaacgctcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAATTTGTAAAACTTGTGCATT 541 379 92 Antisense
TTTTTTTCTCCAAATCAGTGCCTAT 333 675 124 Antisense
AAATCAGTGCCTATTCCGTGTGAAT 584 117 135 Antisense
CGTGTGAATTTCTCTTCGTAAGCCC 442 245 151 Antisense
CACACACCCGAAATACCAACAAACT 386 193 181 Antisense
CTCAACCAGTCTTCTTGTTTTTCTC 12 229 213 Antisense
TGTTTTTCTCCCGTAGATTTTTCTG 594 559 228 Antisense
CTCCCGTAGATTTTTCTGTGATGCT 326 233 235 Antisense
TCTCATCCAAAACCATTGTCCCTTT 95 613 264 Antisense
CATTGTCCCTTTTTAGACTTACAGC 140 215 277 Antisense
TAGACTTACAGCAGAAACGCTCATA 12 653 290 Antisense
Sequence Source Affymetrix Proprietary Database