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[175438_at]

Description AV178979_rc /REP_DB=TREMBL Accession /GB=AV178979 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk586a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 40      6grp_total > 28      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1116
1 2 3 4 range
A 840.9
(-0.6)
P 		517.6
(-3)
P 		621.7
(-2.2)
P 		1315.8
(3)
P 		798
B 854.3
(0.6)
P 		597.6
(-1.3)
P 		369.8
(-3)
P 		1174.1
(3)
P 		804
C 737.3
(-2.1)
P 		643.9
(-2.7)
P 		598.1
(-3)
P 		1485.4
(3)
P 		887
avr 810.8
(-0.9) 		586.4
(-2.6) 		529.9
(-3) 		1325.1
(3) 		795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 909
1 2 3 4 5 6 range
A 1192
(3)
P 		680.4
(-0.8)
P 		383.3
(-3)
P 		509.4
(-2.1)
P 		604.9
(-1.4)
P 		834.2
(0.3)
P 		809
B 1118.8
(3)
P 		647.9
(-0.4)
P 		283.4
(-3)
P 		573.2
(-0.9)
P 		622.5
(-0.6)
P 		639.1
(-0.4)
P 		835
C 983.9
(3)
P 		744.1
(-0)
P 		546.7
(-2.5)
P 		507
(-3)
P 		573.4
(-2.2)
P 		687.5
(-0.7)
P 		477
avr 1098.2
(3) 		690.8
(-0.5) 		404.5
(-3) 		529.9
(-1.9) 		600.3
(-1.3) 		720.3
(-0.3) 		694
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 306.2
(3)
P 		112.4
(-3)
P 		162.5
(-1.4)
P 		192.6
(-0.5)
P 		194
B 272.4
(3)
P 		147.6
(-1)
P 		85.7
(-3)
P 		250.2
(2.3)
P 		187
C 244.1
(2.4)
P 		185.1
(-3)
P 		208.5
(-0.9)
P 		250.5
(3)
P 		65
avr 274.2
(3) 		148.4
(-3) 		152.2
(-2.8) 		231.1
(0.9) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 219.7
(2.2)
P 		242
(3)
P 		83.5
(-3)
P 		129.2
(-1.3)
P 		182.5
(0.7)
P 		203.1
(1.5)
P 		159
B 389.3
(3)
P 		215.7
(-0.2)
P 		68.8
(-3)
P 		151.8
(-1.4)
P 		252.9
(0.4)
P 		238.3
(0.2)
P 		321
C 364.7
(3)
P 		227.1
(-0.1)
P 		139.1
(-2.2)
P 		102
(-3)
P 		185.5
(-1.1)
P 		230.2
(-0.1)
P 		263
avr 324.6
(3) 		228.3
(0.5) 		97.1
(-3) 		127.7
(-2.2) 		207
(-0.1) 		223.9
(0.3) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20998
Sequence Type Exemplar sequence
Representative Public ID AV178979 NCBI
Target Description AV178979_rc /REP_DB=TREMBL Accession /GB=AV178979 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk586a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065401 NCBI Caenorhabditis elegans C36E8.2 (C36E8.2) mRNA, complete cds. 11/11 A 
C36E8.2 ENSEMBL cdna:known chromosome:CEL140:III:3989350:3992150:-1 gene:C36E8.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019691 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3989359-3989647(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36E8.2
Entrez Gene 175516 Entrez gene
SwissProt O62089 EMBL-EBI
WormBase CE30888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84649 Hypothetical protein C36E8.2 [Caenorhabditis elegans] ref|NP_497802.2| C36E8.2 [Caenorhabditis elegans] 1.0E-119
blast CAE60102 Hypothetical protein CBG03635 [Caenorhabditis briggsae] 9.0E-90
blast CAA92187 Hypothetical protein R01E6.6 [Caenorhabditis elegans] ref|NP_510267.1| R01E6.6 [Caenorhabditis elegans] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:175438_AT
tgctgaaagctttgaccatcacaccgtcgagaataattgcgtcgagtcatccggcaattt
tctagcgccacctacggtttactgaaattccacttttttctgaaatttttttgctggtac
tcgcctggttcagatgtttataaattgattcatcgtactgtaaaataattgaaatacaat
tttctgaactttcagttttttttgaaactccttcccttattgtcttttcaccaatattcc
tcaatttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGAAAGCTTTGACCATCACACC 55 583 20 Antisense
CTTTGACCATCACACCGTCGAGAAT 367 223 29 Antisense
GAATAATTGCGTCGAGTCATCCGGC 516 327 50 Antisense
GAGTCATCCGGCAATTTTCTAGCGC 93 401 63 Antisense
GCGCCACCTACGGTTTACTGAAATT 206 255 84 Antisense
GAAATTTTTTTGCTGGTACTCGCCT 645 361 121 Antisense
GGTACTCGCCTGGTTCAGATGTTTA 85 505 135 Antisense
TATAAATTGATTCATCGTACTGTAA 430 655 158 Antisense
AAATACAATTTTCTGAACTTTCAGT 618 111 191 Antisense
TTCCCTTATTGTCTTTTCACCAATA 423 697 231 Antisense
TTTTCACCAATATTCCTCAATTTCC 177 677 244 Antisense
Sequence Source Affymetrix Proprietary Database