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[175436_at]

Description AV180970_rc /REP_DB=TREMBL Accession /GB=AV180970 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk614d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 82      6grp_total > 29      4grp_total > 15      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 367.2
(3)
P 		226.8
(-3)
P 		290.4
(-0.3)
P 		355.5
(2.5)
P 		140
B 331.3
(1.7)
P 		348.5
(3)
P 		268.5
(-3)
P 		329.5
(1.6)
P 		80
C 360.8
(-0.1)
P 		326.8
(-3)
P 		375.8
(1.2)
P 		397.2
(3)
P 		70
avr 353.1
(2.2) 		300.7
(-3) 		311.6
(-1.9) 		360.7
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 417
(0.8)
P 		305.3
(-1.2)
P 		410.7
(0.7)
P 		206.4
(-3)
P 		536.1
(3)
P 		286.8
(-1.5)
P 		330
B 490.3
(3)
P 		357.5
(-1.4)
P 		308.5
(-3)
P 		363.2
(-1.2)
P 		380.1
(-0.6)
P 		434.2
(1.1)
P 		182
C 400
(3)
P 		350.1
(1.3)
P 		219.4
(-3)
P 		220.7
(-3)
P 		311.9
(0.1)
P 		390.9
(2.7)
P 		181
avr 435.8
(3) 		337.6
(-0.4) 		312.9
(-1.3) 		263.4
(-3) 		409.4
(2.1) 		370.6
(0.7) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 133.7
(3)
P 		49.2
(-3)
P 		75.9
(-1.1)
P 		52
(-2.8)
P 		85
B 105.7
(3)
P 		86.1
(0.3)
P 		62.2
(-3)
P 		70.2
(-1.9)
P 		44
C 119.4
(1.9)
P 		94
(-0.5)
P 		131
(3)
P 		67
(-3)
P 		64
avr 119.6
(3) 		76.4
(-1.6) 		89.7
(-0.2) 		63.1
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 76.9
(-1.7)
P 		108.6
(0.1)
P 		89.4
(-1)
P 		52.3
(-3)
P 		161.8
(3)
P 		69.8
(-2)
P 		110
B 170.6
(3)
P 		119
(-0.2)
P 		74.9
(-3)
P 		96.2
(-1.7)
P 		154.4
(2)
P 		161.9
(2.5)
P 		96
C 148.3
(3)
P 		106.8
(0.6)
P 		55.8
(-2.3)
P 		44.4
(-3)
P 		100.9
(0.3)
P 		130.9
(2)
P 		104
avr 131.9
(2.4) 		111.5
(0.8) 		73.4
(-2.3) 		64.3
(-3) 		139
(3) 		120.9
(1.5) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22117
Sequence Type Exemplar sequence
Representative Public ID AV180970 NCBI
Target Description AV180970_rc /REP_DB=TREMBL Accession /GB=AV180970 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk614d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077000 NCBI Caenorhabditis elegans R09F10.3 (R09F10.3) mRNA, complete cds. 11/11 None
R09F10.3.2 ENSEMBL cdna:known chromosome:CEL140:X:8294560:8296601:1 gene:R09F10.3 11/11 A 
R09F10.3.3 ENSEMBL cdna:known chromosome:CEL140:X:8294562:8296735:1 gene:R09F10.3 11/11 None
R09F10.3.1 ENSEMBL cdna:known chromosome:CEL140:X:8294562:8296601:1 gene:R09F10.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002579 1/11 Cross Hyb Matching Probes None
SNAP00000002569 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8296234-8296546(+) 91.99 99.68
Public Domain and Genome References
Gene Title
Ensembl R09F10.3
Entrez Gene 181085 Entrez gene
SwissProt Q23026 EMBL-EBI
WormBase CE33810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509401 R09F10.3 [Caenorhabditis elegans] gb|AAC69092.2| Hypothetical protein R09F10.3 [Caenorhabditis elegans] 0.0
blast CAE74872 Hypothetical protein CBG22731 [Caenorhabditis briggsae] 1.0E-106
Sequence
Target Sequence 
>C. ELEGANS:175436_AT
aatgctgctcacgaagtttgtcgctaaacatttctcagtatttaagtattgttttcttaa
attaaaaatatattcaagcatttcttactaaccttatcatttcctaatctttaagacctt
tttttccattgatctcaaaatttgttcaaaatatgtgtatgtgaatgatatctctgtttt
tcactacaatctcatgtttatactttgccagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTGCTCACGAAGTTTGTCGCT 599 163 76 Antisense
GTTTGTCGCTAAACATTTCTCAGTA 522 451 91 Antisense
AACATTTCTCAGTATTTAAGTATTG 39 139 102 Antisense
AGCATTTCTTACTAACCTTATCATT 650 77 152 Antisense
TAACCTTATCATTTCCTAATCTTTA 585 637 164 Antisense
TATCATTTCCTAATCTTTAAGACCT 682 659 170 Antisense
AAGACCTTTTTTTCCATTGATCTCA 488 153 188 Antisense
GTGTATGTGAATGATATCTCTGTTT 151 487 230 Antisense
GATATCTCTGTTTTTCACTACAATC 19 427 242 Antisense
CTGTTTTTCACTACAATCTCATGTT 477 239 249 Antisense
ATCTCATGTTTATACTTTGCCAGAA 174 33 264 Antisense
Sequence Source Affymetrix Proprietary Database