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[175435_s_at]

Description AV176119_rc /REP_DB=TREMBL Accession /GB=AV176119 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 74      6grp_total > 55      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 622
1 2 3 4 range
A 804.8
(3)
P 		410.1
(-3)
P 		523.3
(-1.3)
P 		552.9
(-0.8)
P 		395
B 747.5
(3)
P 		432
(-3)
P 		544.8
(-0.9)
P 		714.3
(2.4)
P 		316
C 709.5
(0.5)
P 		347.8
(-3)
P 		467.1
(-1.8)
P 		969.3
(3)
P 		622
avr 753.9
(3) 		396.6
(-3) 		511.7
(-1.1) 		745.5
(2.9) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 492.8
(-2.5)
P 		522.4
(-2.1)
P 		841.4
(2.3)
P 		675.7
(0)
P 		455.9
(-3)
P 		893
(3)
P 		437
B 787.1
(2.2)
P 		604.3
(-1.7)
P 		823.8
(3)
P 		685.7
(0.1)
P 		542.6
(-3)
P 		788.8
(2.3)
P 		281
C 609.3
(-0.7)
P 		683.1
(0.4)
P 		860
(3)
P 		721.9
(1)
P 		455.8
(-3)
P 		725
(1)
P 		404
avr 629.7
(-0.6) 		603.3
(-1) 		841.7
(3) 		694.4
(0.5) 		484.8
(-3) 		802.3
(2.3) 		357
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 293
(3)
P 		89
(-2.8)
P 		136.8
(-1.4)
P 		80.9
(-3)
P 		212
B 238.4
(3)
P 		106.7
(-3)
P 		126.2
(-2.1)
P 		152.2
(-0.9)
P 		132
C 234.9
(3)
P 		100
(-3)
P 		162.8
(-0.2)
P 		163.4
(-0.2)
P 		135
avr 255.4
(3) 		98.6
(-3) 		141.9
(-1.3) 		132.2
(-1.7) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 90.8
(-3)
P 		185.8
(1.5)
P 		183.2
(1.4)
P 		171.4
(0.8)
P 		137.6
(-0.8)
P 		217.4
(3)
P 		127
B 273.9
(1.9)
P 		201.2
(-2)
P 		200
(-2)
P 		181.6
(-3)
P 		220.5
(-0.9)
P 		294.1
(3)
P 		113
C 225.9
(2)
P 		208.4
(0.9)
P 		218.9
(1.5)
P 		145.2
(-3)
P 		147.5
(-2.9)
P 		242.7
(3)
P 		98
avr 196.9
(-0.8) 		198.5
(-0.7) 		200.7
(-0.6) 		166.1
(-3) 		168.5
(-2.8) 		251.4
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175435_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20450
Sequence Type Exemplar sequence
Representative Public ID AV176119 NCBI
Target Description AV176119_rc /REP_DB=TREMBL Accession /GB=AV176119 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058260 NCBI Caenorhabditis elegans Y74C9A.3 (Y74C9A.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000028629 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2566:10575:-1 9/11 None
SNAP00000028619 ENSEMBL cdna:SNAP chromosome:CEL140:I:4221:7456:-1 11/11 None
Y74C9A.3.1 ENSEMBL cdna:known chromosome:CEL140:I:4132:10230:-1 gene:Y74C9A.3 11/11 None
Y74C9A.3.2 ENSEMBL cdna:known chromosome:CEL140:I:4221:10232:-1 gene:Y74C9A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4190-5287(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y74C9A.3
Entrez Gene 171590 Entrez gene
SwissProt Q9N4D9 EMBL-EBI
WormBase CE28146 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249054_AT expressed protein at
CANINE:1586717_AT similar to CG1675-PA cfa
CANINE_2:CFA.11835.1.A1_AT similar to CG1675-PA cfa
CANINE_2:CFA.11835.1.A1_S_AT similar to CG1675-PA cfa
CANINE_2:CFAAFFX.30589.1.S1_AT similar to CG1675-PA cfa
DROSOPHILA_2:1631214_AT dm
DROSGENOME1:146907_AT dm
HG-U133_PLUS_2:223369_AT AD-003 protein hs
HG-U133B:223369_AT AD-003 protein hs
HG-U133_PLUS_2:223368_S_AT AD-003 protein hs
HG-U133B:223368_S_AT AD-003 protein hs
HU35KSUBA:RC_AA233545_AT AD-003 protein hs
U133_X3P:G12655090_3P_AT AD-003 protein hs
HG-U95B:44694_AT AD-003 protein hs
MG-U74CV2:165450_I_AT RIKEN cDNA 2610205E22 gene mm
MG-U74CV2:170985_AT RIKEN cDNA 2610205E22 gene mm
MOE430A:1451278_A_AT RIKEN cDNA 2610205E22 gene mm
MOUSE430A_2:1451278_A_AT RIKEN cDNA 2610205E22 gene mm
MOUSE430_2:1451278_A_AT RIKEN cDNA 2610205E22 gene mm
MU11KSUBA:AA155358_AT RIKEN cDNA 2610205E22 gene (2610205E22Rik), mRNA mm
MU19KSUBB:TC30536_AT RIKEN cDNA 2610205E22 gene (2610205E22Rik), mRNA mm
MU19KSUBC:TC36525_AT RIKEN cDNA 2610205E22 gene (2610205E22Rik), mRNA mm
MU19KSUBC:TC36525_G_AT RIKEN cDNA 2610205E22 gene (2610205E22Rik), mRNA mm
RAE230B:1381152_AT similar to RIKEN cDNA 2610205E22 rn
RAT230_2:1381152_AT similar to RIKEN cDNA 2610205E22 rn
Protein Similarities
Method ID Description E-Value
blast AAF36050 Hypothetical protein Y74C9A.3 [Caenorhabditis elegans] ref|NP_490660.1| Y74C9A.3 [Caenorhabditis elegans] 1.0E-136
blast AAF36050 Hypothetical protein Y74C9A.3 [Caenorhabditis elegans] ref|NP_490660.1| Y74C9A.3 [Caenorhabditis elegans] 1.0E-122
blast CAE60325 Hypothetical protein CBG03917 [Caenorhabditis briggsae] 1.0E-111
blast CAE60325 Hypothetical protein CBG03917 [Caenorhabditis briggsae] 1.0E-106
blast AAF36050 Hypothetical protein Y74C9A.3 [Caenorhabditis elegans] ref|NP_490660.1| Y74C9A.3 [Caenorhabditis elegans] 1.0E-103
blast CAE60325 Hypothetical protein CBG03917 [Caenorhabditis briggsae] 4.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR008576 EMBL-EBI Eukaryotic protein of unknown function DUF858 1.0E-126
Pfam IPR008576 EMBL-EBI Eukaryotic protein of unknown function DUF858 1.0E-126
Pfam IPR008576 EMBL-EBI Eukaryotic protein of unknown function DUF858 4.6E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028629 1 307-326
Sequence
Target Sequence 
>C. ELEGANS:175435_S_AT
aacctggtggatgtattgtgctcaaggataatgtgacaaatcacgagaaacggttattcg
acgatgatgatcatagttggacgagaacagagcccgagcttcttaaagcgttcgccgatt
ctcaactggacatggtctcgaaagcactgcaaaccggattcccaaaggagatttatccag
taaaaatgtatgcattgaagcctcaacacaccggattcaccaataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTGGTGGATGTATTGTGCTCAA 444 145 14 Antisense
GAGAAACGGTTATTCGACGATGATG 427 391 58 Antisense
GATGATGATCATAGTTGGACGAGAA 441 409 76 Antisense
GCCCGAGCTTCTTAAAGCGTTCGCC 2 287 105 Antisense
TTAAAGCGTTCGCCGATTCTCAACT 135 683 116 Antisense
CGCCGATTCTCAACTGGACATGGTC 665 255 126 Antisense
GGACATGGTCTCGAAAGCACTGCAA 386 525 141 Antisense
GCACTGCAAACCGGATTCCCAAAGG 534 311 157 Antisense
GATTCCCAAAGGAGATTTATCCAGT 625 431 170 Antisense
GTATGCATTGAAGCCTCAACACACC 392 455 201 Antisense
TCAACACACCGGATTCACCAATAAT 81 631 216 Antisense
Sequence Source Affymetrix Proprietary Database