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[175434_at]

Description AV176153_rc /REP_DB=TREMBL Accession /GB=AV176153 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 91      6grp_total > 48      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 229.4
(3)
P 		106.3
(-3)
P 		157.8
(-0.5)
P 		204.8
(1.8)
P 		123
B 166.1
(0.1)
P 		117.4
(-2.3)
P 		103.8
(-3)
P 		224.9
(3)
P 		121
C 237.7
(3)
P 		124.9
(-3)
P 		202.4
(1.1)
P 		235.3
(2.9)
P 		113
avr 211.1
(2.4) 		116.2
(-3) 		154.7
(-0.8) 		221.7
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 160.9
(-1.2)
P 		311.4
(3)
P 		96.1
(-3)
P 		110
(-2.6)
P 		217.2
(0.4)
P 		288.5
(2.4)
P 		215
B 243.7
(3)
P 		186.4
(-0.9)
P 		154.5
(-3)
P 		204.7
(0.4)
P 		207.6
(0.6)
P 		243.8
(3)
P 		89
C 341.7
(3)
P 		178.6
(-2.9)
P 		306.6
(1.7)
P 		176.6
(-3)
P 		217.3
(-1.5)
P 		321.9
(2.3)
P 		165
avr 248.8
(1.2) 		225.5
(0.1) 		185.7
(-1.9) 		163.8
(-3) 		214
(-0.5) 		284.7
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 83.5
(3)
P 		23.1
(-3)
P 		41.3
(-1.2)
P 		30
(-2.3)
P 		60
B 53
(3)
P 		29
(-2)
P 		24
(-3)
P 		47.9
(1.9)
P 		29
C 78.7
(3)
P 		35.9
(-3)
P 		70.5
(1.9)
P 		39.7
(-2.5)
P 		43
avr 71.7
(3) 		29.3
(-3) 		45.3
(-0.7) 		39.2
(-1.6) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 29.7
(-2.4)
P 		110.8
(3)
P 		20.9
(-3)
P 		27.9
(-2.5)
P 		65.6
(-0)
P 		70.2
(0.3)
P 		90
B 84.8
(2.3)
P 		62
(-0.2)
P 		37.5
(-3)
P 		54.2
(-1.1)
P 		84.3
(2.3)
P 		90.9
(3)
P 		53
C 126.7
(3)
P 		54.5
(-1.8)
P 		78
(-0.2)
P 		35.5
(-3)
P 		70.3
(-0.7)
P 		107.8
(1.8)
P 		91
avr 80.4
(1.9) 		75.8
(1.4) 		45.5
(-2.3) 		39.2
(-3) 		73.4
(1.1) 		89.6
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20573
Sequence Type Exemplar sequence
Representative Public ID AV176153 NCBI
Target Description AV176153_rc /REP_DB=TREMBL Accession /GB=AV176153 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064152 NCBI Caenorhabditis elegans Y17G7B.2b (Y17G7B.2) mRNA, complete cds. 11/11 None
Y17G7B.2b ENSEMBL cdna:known chromosome:CEL140:II:11980329:11988764:1 gene:Y17G7B.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030400 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174838 3 1 NM_064152 175434_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11988432-11988713(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y17G7B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19468 Hypothetical protein Y17G7B.2b [Caenorhabditis elegans] ref|NP_496553.1| Y17G7B.2b [Caenorhabditis elegans] 0.0
blast CAA19449 Hypothetical protein Y17G7B.2a [Caenorhabditis elegans] ref|NP_496555.1| Y17G7B.2a [Caenorhabditis elegans] 0.0
blast CAE73557 Hypothetical protein CBG21026 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 2.8E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Sequence
Target Sequence 
>C. ELEGANS:175434_AT
tttcgatttttcagacattttcctatttcttttttcaactaatattattcctggcaatgt
gccaaattttccttaaaaaaccctttttttgtcatttttctcgatttttccccaaaaaat
cccttatgagctcccattttccatggaaattctaacatttttctccgtatttaattaatt
ttttttgctactctcccgattaatctctaatgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGATTTTTCAGACATTTTCCTA 370 671 25 Antisense
TTTTCAGACATTTTCCTATTTCTTT 173 677 32 Antisense
CTTTTTTCAACTAATATTATTCCTG 262 223 53 Antisense
ATTATTCCTGGCAATGTGCCAAATT 105 13 68 Antisense
TTCCCCAAAAAATCCCTTATGAGCT 643 693 132 Antisense
AAAAAATCCCTTATGAGCTCCCATT 641 127 138 Antisense
CTTATGAGCTCCCATTTTCCATGGA 615 221 147 Antisense
GAGCTCCCATTTTCCATGGAAATTC 708 387 152 Antisense
GAAATTCTAACATTTTTCTCCGTAT 300 363 170 Antisense
CTACTCTCCCGATTAATCTCTAATG 171 227 212 Antisense
TCTCCCGATTAATCTCTAATGTTCA 136 611 216 Antisense
Sequence Source Affymetrix Proprietary Database