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[175432_at]

Description AV200978_rc /REP_DB=TREMBL Accession /GB=AV200978 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 91      4grp_high_8_8 > 10      6grp_highest_nonorm > 82      6grp_total > 93      4grp_total > 22      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 563
1 2 3 4 range
A 741.1
(3)
P 		197.5
(-2.9)
P 		185.5
(-3)
A 		698.7
(2.5)
P 		556
B 572.1
(1.5)
P 		358.6
(-1.1)
P 		194.5
(-3)
P 		702.9
(3)
P 		508
C 709.1
(3)
P 		286.9
(-1.8)
P 		178.2
(-3)
P 		631
(2.1)
P 		531
avr 674.1
(3) 		281
(-1.8) 		186.1
(-3) 		677.5
(3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 266.2
(-0.7)
P 		264.3
(-0.8)
P 		272.1
(-0.6)
P 		149.9
(-3)
P 		455.2
(3)
P 		257.8
(-0.9)
P 		305
B 519.6
(2.5)
P 		365.4
(-3)
P 		520.2
(2.5)
P 		380.8
(-2.5)
P 		535.1
(3)
P 		381.4
(-2.4)
P 		170
C 327.8
(-2)
P 		425.6
(3)
P 		322
(-2.3)
P 		308
(-3)
P 		350.1
(-0.9)
P 		345.5
(-1.1)
P 		118
avr 371.2
(0.3) 		351.8
(-0.4) 		371.4
(0.3) 		279.6
(-3) 		446.8
(3) 		328.2
(-1.3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 269.8
(3)
P 		42.9
(-3)
P 		48.5
(-2.9)
A 		102.3
(-1.4)
P 		227
B 182.4
(3)
P 		88.6
(-1.1)
P 		45.1
(-3)
P 		149.8
(1.6)
P 		137
C 234.7
(3)
P 		82.5
(-2.3)
P 		62.1
(-3)
P 		106.4
(-1.5)
P 		173
avr 229
(3) 		71.3
(-2.3) 		51.9
(-3) 		119.5
(-0.7) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 49.1
(-2.3)
P 		94
(0.4)
P 		59.3
(-1.7)
P 		38
(-3)
P 		137.4
(3)
P 		62.8
(-1.5)
P 		99
B 180.8
(1.1)
P 		121.6
(-1.9)
P 		126.3
(-1.7)
P 		100.8
(-3)
P 		217.4
(3)
P 		142.2
(-0.9)
P 		117
C 121.5
(2.3)
P 		129.9
(3)
P 		82
(-1.2)
P 		61.9
(-3)
P 		113.3
(1.5)
P 		115.7
(1.7)
P 		68
avr 117.1
(0.4) 		115.2
(0.3) 		89.2
(-1.5) 		66.9
(-3) 		156
(3) 		106.9
(-0.3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20051
Sequence Type Exemplar sequence
Representative Public ID AV200978 NCBI
Target Description AV200978_rc /REP_DB=TREMBL Accession /GB=AV200978 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182019
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y95B8A.6a.1 ENSEMBL cdna:known chromosome:CEL140:I:886213:890209:1 gene:Y95B8A.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:889854-890134(+) 87.14 100.0
Public Domain and Genome References
Ensembl Y95B8A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60899 Hypothetical protein Y95B8A.6a [Caenorhabditis elegans] ref|NP_490788.1| Y95B8A.6a [Caenorhabditis elegans] 5.0E-98
blast CAE71589 Hypothetical protein CBG18546 [Caenorhabditis briggsae] 2.0E-88
blast AAO21388 Hypothetical protein Y95B8A.6b [Caenorhabditis elegans] ref|NP_871819.1| Y95B8A.6b [Caenorhabditis elegans] 8.0E-57
Sequence
Target Sequence 
>C. ELEGANS:175432_AT
tggaaattaaatacggatgctgctgccaaatatgctgccaaattcaaattctcgccttgt
acacacgatctttattgaaaacggtgatcaacgggcaccctccactctgaccttttatct
gaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAATTAAATACGGATGCTGCTG 84 547 49 Antisense
GGATGCTGCTGCCAAATATGCTGCC 537 513 63 Antisense
TGCTGCTGCCAAATATGCTGCCAAA 144 583 66 Antisense
GCCAAATATGCTGCCAAATTCAAAT 690 277 73 Antisense
AAATTCAAATTCTCGCCTTGTACAC 665 115 88 Antisense
AAATTCTCGCCTTGTACACACGATC 539 115 94 Antisense
TCTCGCCTTGTACACACGATCTTTA 47 611 98 Antisense
GCCTTGTACACACGATCTTTATTGA 299 281 102 Antisense
ACACACGATCTTTATTGAAAACGGT 68 111 109 Antisense
TATTGAAAACGGTGATCAACGGGCA 38 653 121 Antisense
TCCACTCTGACCTTTTATCTGAAAA 236 589 149 Antisense
Sequence Source Affymetrix Proprietary Database