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[175431_at]

Description AV179466_rc /REP_DB=TREMBL Accession /GB=AV179466 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk593d8 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 24.6
(3)
A 		16.9
(0.8)
A 		3.8
(-3)
A 		16.2
(0.6)
A 		21
B 6
(-2.1)
A 		1
(-3)
A 		32.7
(3)
A 		27.1
(1.9)
A 		32
C 2
(-3)
A 		2
(-3)
A 		20
(1.3)
A 		27.4
(3)
A 		25
avr 10.9
(-1.5) 		6.6
(-3) 		18.8
(1.3) 		23.6
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12.4
(-0.7)
A 		5.2
(-2.4)
A 		14
(-0.3)
A 		2.7
(-3)
A 		27.5
(3)
A 		23.4
(2)
A 		25
B 13.6
(-0)
A 		1.1
(-3)
A 		1.8
(-2.8)
A 		23.8
(2.4)
A 		12.3
(-0.3)
A 		26.4
(3)
A 		25
C 4.8
(-2)
A 		3.1
(-2.5)
A 		22.1
(3)
A 		4.9
(-2)
A 		1.4
(-3)
A 		17
(1.5)
A 		21
avr 10.3
(-0.8) 		3.1
(-3) 		12.6
(-0) 		10.5
(-0.7) 		13.7
(0.3) 		22.3
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9
(3)
A 		3.7
(-1)
A 		1
(-3)
A 		2.4
(-2)
A 		8
B 1.9
(-1.7)
A 		0.3
(-3)
A 		7.6
(3)
A 		5.8
(1.5)
A 		7
C 0.6
(-3)
A 		0.6
(-3)
A 		7
(3)
A 		4.6
(0.8)
A 		6
avr 3.8
(0.7) 		1.5
(-3) 		5.2
(3) 		4.3
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.3
(-1.7)
A 		1.9
(-2.1)
A 		3
(-1.2)
A 		0.7
(-3)
A 		8.3
(3)
A 		5.7
(0.9)
A 		8
B 4.7
(-0.3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		6.3
(0.8)
A 		5
(-0.1)
A 		9.8
(3)
A 		9
C 1.8
(-1.5)
A 		0.9
(-2.5)
A 		5.6
(2.9)
A 		1
(-2.4)
A 		0.5
(-3)
A 		5.7
(3)
A 		5
avr 2.9
(-1.2) 		1.1
(-3) 		3
(-1.1) 		2.7
(-1.4) 		4.6
(0.5) 		7.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20814
Sequence Type Exemplar sequence
Representative Public ID AV179466 NCBI
Target Description AV179466_rc /REP_DB=TREMBL Accession /GB=AV179466 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk593d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027321 NCBI Caenorhabditis elegans ZC239.20 (ZC239.20) mRNA, complete cds. 11/11 None
SNAP00000024290 ENSEMBL cdna:SNAP chromosome:CEL140:II:3206060:3206518:-1 11/11 None
GENEFINDER00000024312 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3206021:3206518:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023611 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023634 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3206087-3206367(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565872 Entrez gene
SwissProt Q4TT85 EMBL-EBI
WormBase CE38759 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY55900 Hypothetical protein ZC239.20 [Caenorhabditis elegans] ref|NP_001022492.1| ZC239.20 [Caenorhabditis elegans] 5.0E-73
blast AAY55900 Hypothetical protein ZC239.20 [Caenorhabditis elegans] ref|NP_001022492.1| ZC239.20 [Caenorhabditis elegans] 1.0E-72
blast AAY55901 Hypothetical protein ZC239.21 [Caenorhabditis elegans] ref|NP_001022493.1| ZC239.21 [Caenorhabditis elegans] 2.0E-47
blast AAY55901 Hypothetical protein ZC239.21 [Caenorhabditis elegans] ref|NP_001022493.1| ZC239.21 [Caenorhabditis elegans] 4.0E-47
Sequence
Target Sequence 
>C. ELEGANS:175431_AT
gctttggagccatctcagcaactgctcaattggaggtgttggatgaaaaaatcaaaatct
ggaagaagctagagcacatcgcaattgcagagctcaatcttatgagcttaaacctagtcc
atgaagtaagagccaacacaggaaaaagcttcgaaggtgttactggaattatgaagcagc
aagtggctctggcggagaagagcatgcagattgtggatcaaaacttgctcgaagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTGGAGCCATCTCAGCAACTGC 145 305 23 Antisense
GCCATCTCAGCAACTGCTCAATTGG 175 281 31 Antisense
ACTGCTCAATTGGAGGTGTTGGATG 709 97 43 Antisense
GAAGCTAGAGCACATCGCAATTGCA 215 343 87 Antisense
ATCGCAATTGCAGAGCTCAATCTTA 212 37 100 Antisense
ATCTTATGAGCTTAAACCTAGTCCA 647 29 119 Antisense
TAGTCCATGAAGTAAGAGCCAACAC 74 655 137 Antisense
AAGCTTCGAAGGTGTTACTGGAATT 439 147 168 Antisense
TGAAGCAGCAAGTGGCTCTGGCGGA 363 575 194 Antisense
AGAAGAGCATGCAGATTGTGGATCA 118 75 218 Antisense
GTGGATCAAAACTTGCTCGAAGCAG 632 489 235 Antisense
Sequence Source Affymetrix Proprietary Database