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[175428_at]

Description AV200811_rc /REP_DB=TREMBL Accession /GB=AV200811 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk580h3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 97      6grp_total > 97      4grp_total > 03      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1281
1 2 3 4 range
A 96.9
(-2.5)
P 		22.7
(-3)
A 		35.6
(-2.9)
A 		896.7
(3)
P 		874
B 99.6
(-2.7)
P 		53
(-2.9)
A 		39.8
(-3)
A 		1303.2
(3)
P 		1263
C 117.6
(-2.3)
P 		30.3
(-3)
A 		40.8
(-2.9)
A 		820.6
(3)
P 		790
avr 104.7
(-2.6) 		35.3
(-3) 		38.7
(-3) 		1006.8
(3) 		972

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 69.4
(-3)
P 		81.3
(-2.2)
P 		76.7
(-2.5)
P 		92.9
(-1.5)
P 		164.1
(3)
P 		156.2
(2.5)
P 		95
B 66.5
(-2.9)
P 		64.9
(-3)
A 		131.6
(1.3)
P 		87.5
(-1.6)
P 		157.9
(2.9)
P 		158.7
(3)
P 		94
C 86.9
(-3)
P 		99.1
(-2.4)
M 		103.6
(-2.2)
A 		125.9
(-1.1)
P 		110.3
(-1.8)
P 		208.5
(3)
P 		122
avr 74.3
(-3) 		81.8
(-2.6) 		104
(-1.2) 		102.1
(-1.3) 		144.1
(1.2) 		174.5
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 35.3
(-1.6)
P 		4.9
(-3)
A 		9.3
(-2.8)
A 		131.3
(3)
P 		126
B 31.8
(-2.5)
P 		13.1
(-2.9)
A 		9.2
(-3)
A 		277.7
(3)
P 		269
C 38.9
(-1.6)
P 		8.7
(-3)
A 		14.2
(-2.7)
A 		138.4
(3)
P 		130
avr 35.3
(-2.1) 		8.9
(-3) 		10.9
(-2.9) 		182.5
(3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 12.8
(-3)
P 		28.9
(-0.4)
P 		16.7
(-2.4)
P 		23.6
(-1.2)
P 		49.5
(3)
P 		38
(1.1)
P 		37
B 23.1
(-2.8)
P 		21.6
(-3)
A 		32
(-1.5)
P 		23.2
(-2.8)
P 		64.2
(3)
P 		59.2
(2.3)
P 		43
C 32.2
(-2.1)
P 		30.2
(-2.3)
M 		26.4
(-2.9)
A 		25.3
(-3)
P 		35.7
(-1.6)
P 		69.8
(3)
P 		45
avr 22.7
(-3) 		26.9
(-2.2) 		25
(-2.6) 		24
(-2.8) 		49.8
(1.9) 		55.7
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21703
Sequence Type Exemplar sequence
Representative Public ID AV200811 NCBI
Target Description AV200811_rc /REP_DB=TREMBL Accession /GB=AV200811 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk580h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072939(11), NM_001028507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072939 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-34) (srsx-34) mRNA, complete cds. 11/11 A 
NM_001028507 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-34) (srsx-34) mRNA, complete cds. 11/11 None
GENEFINDER00000038745 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9039080:9046234:1 11/11 None
C25E10.3b ENSEMBL cdna:known chromosome:CEL140:V:9039080:9042876:1 gene:C25E10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179281 3 2 NM_001028507 175428_at (11)
NM_072939 175428_at (11), 187851_at (11)
NM_072940 187851_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9042540-9042867(+) 95.0 100.0
Public Domain and Genome References
Ensembl C25E10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68203 Serpentine receptor, class sx protein 34, isoform b [Caenorhabditis elegans] ref|NP_505340.1| Serpentine Receptor, class SX family member (srsx-34) [Caenorhabditis elegans] 0.0
blast AAA92309 Serpentine receptor, class sx protein 34, isoform a [Caenorhabditis elegans] ref|NP_505341.1| Serpentine Receptor, class SX family member (srsx-34) [Caenorhabditis elegans] 0.0
blast AAA92310 Cytochrome p450 family protein 33B1 [Caenorhabditis elegans] ref|NP_505342.2| CYtochrome P450 family member (cyp-33B1) [Caenorhabditis elegans] 0.0
blast CAE72080 Hypothetical protein CBG19166 [Caenorhabditis briggsae] 1.0E-173
blast AAX22295 Serpentine receptor, class sx protein 34, isoform c [Caenorhabditis elegans] ref|NP_001023678.1| Serpentine Receptor, class SX family member (srsx-34) [Caenorhabditis elegans] 1.0E-158
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 3.7E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505340.1 14 33-55,70-92,105-122,132-154,166-188,208-230,280-302,312-331,343-361,390-412,432-451,461-483,495-517,527-549
NP_001023678.1 7 10-32,41-63,78-100,120-142,162-184,205-227,237-259
C25E10.3b 14 33-55,70-92,105-122,132-154,166-188,208-230,280-302,312-331,343-361,390-412,432-451,461-483,495-517,527-549
GENEFINDER00000038745 15 33-55,70-92,105-122,132-154,166-188,208-230,280-302,312-331,343-361,395-417,455-477,487-509,530-552,572-594,601-623
Sequence
Target Sequence 
>C. ELEGANS:175428_AT
ttggttggactgttacgtgcatctccaacacatttgtcgtgctatttgttctatacggaa
aacaaatagtgaacatgtacgcgggcattccagtgaacatagcatgtgcctcaaatatct
ttgttttttaccgaatcaacctagactaccgcagtggtatcagaaaaatatttccatgca
aaactaccacagtgggttcgatacatgtgcatattgaaagaaacgcgtcaataactacac
ctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTTGGACTGTTACGTGCATCTC 429 707 20 Antisense
GTGCATCTCCAACACATTTGTCGTG 218 481 36 Antisense
ATTTGTCGTGCTATTTGTTCTATAC 94 19 51 Antisense
AGTGAACATGTACGCGGGCATTCCA 683 57 87 Antisense
ACGCGGGCATTCCAGTGAACATAGC 639 89 98 Antisense
GAACATAGCATGTGCCTCAAATATC 503 349 114 Antisense
TACCGAATCAACCTAGACTACCGCA 27 647 148 Antisense
ACCTAGACTACCGCAGTGGTATCAG 262 85 158 Antisense
ATTTCCATGCAAAACTACCACAGTG 74 13 189 Antisense
CAGTGGGTTCGATACATGTGCATAT 263 207 209 Antisense
AGAAACGCGTCAATAACTACACCTG 614 69 238 Antisense
Sequence Source Affymetrix Proprietary Database