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[175427_at]

Description AV199762_rc /REP_DB=TREMBL Accession /GB=AV199762 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk551c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 81      6grp_total > 92      4grp_total > 62      6grp_highest_sub > 05      6grp_high1_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 322.8
(3)
P 		120.6
(-3)
P 		282.9
(1.8)
P 		173.2
(-1.4)
P 		202
B 244.4
(3)
P 		213.8
(1.3)
P 		202
(0.7)
P 		135.9
(-3)
P 		109
C 254
(3)
P 		212.4
(1.5)
P 		184.3
(0.5)
P 		87.9
(-3)
P 		166
avr 273.7
(3) 		182.3
(-0.9) 		223.1
(0.9) 		132.3
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 298.8
(-0.8)
P 		217.5
(-1.8)
P 		154.6
(-2.6)
P 		281.7
(-1)
P 		601.2
(3)
P 		120.7
(-3)
P 		481
B 182.5
(-2.7)
P 		226.7
(-2)
P 		166.8
(-2.9)
P 		346.7
(-0.3)
P 		578.2
(3)
P 		158.7
(-3)
P 		420
C 246.1
(-0.5)
P 		230.2
(-0.8)
P 		209.1
(-1.1)
P 		359.5
(1.3)
P 		464.9
(3)
P 		94.4
(-3)
P 		371
avr 242.5
(-1.3) 		224.8
(-1.6) 		176.8
(-2.3) 		329.3
(-0.1) 		548.1
(3) 		124.6
(-3) 		424
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 117.5
(3)
P 		26.2
(-2.9)
P 		74
(0.2)
P 		25.3
(-3)
P 		92
B 77.9
(3)
P 		52.8
(-0.1)
P 		46.8
(-0.8)
P 		29
(-3)
P 		49
C 84.1
(3)
P 		61.1
(1)
P 		64.2
(1.3)
P 		14.8
(-3)
P 		69
avr 93.2
(3) 		46.7
(-1) 		61.7
(0.3) 		23
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 55.1
(-2)
P 		77.4
(-1.1)
P 		33.7
(-2.8)
P 		71.5
(-1.3)
P 		181.4
(3)
P 		29.4
(-3)
P 		152
B 63.5
(-2.3)
P 		75.5
(-1.9)
P 		40.5
(-3)
P 		91.8
(-1.4)
P 		234.9
(3)
P 		59.2
(-2.4)
P 		194
C 91.2
(0)
P 		70.2
(-1.1)
P 		53.2
(-1.9)
P 		72.3
(-0.9)
P 		150.4
(3)
P 		31.6
(-3)
P 		119
avr 69.9
(-1.8) 		74.4
(-1.6) 		42.5
(-2.9) 		78.5
(-1.5) 		188.9
(3) 		40.1
(-3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20583
Sequence Type Exemplar sequence
Representative Public ID AV199762 NCBI
Target Description AV199762_rc /REP_DB=TREMBL Accession /GB=AV199762 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk551c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064627 NCBI Caenorhabditis elegans C01G12.1 (C01G12.1) mRNA, complete cds. 11/11 None
C01G12.1 ENSEMBL cdna:known chromosome:CEL140:II:14573506:14576408:1 gene:C01G12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14576094-14576366(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G12.1
Entrez Gene 175118 Entrez gene
SwissProt O45233 EMBL-EBI
WormBase CE15571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03812 Hypothetical protein C01G12.1 [Caenorhabditis elegans] ref|NP_497028.1| C01G12.1 [Caenorhabditis elegans] 0.0
blast CAE73415 Hypothetical protein CBG20858 [Caenorhabditis briggsae] 1.0E-142
Sequence
Target Sequence 
>C. ELEGANS:175427_AT
ctgatcggtttaaaaggcgcataatttattttcgtgtcgagacctaaattctggtaggct
actgtaacattgaaaaaacacttcctttatttttcaaaatatctattttgtgttttctta
ttggtgctctcctcattttattaaatgtagaaaacgaaaaatgttcaaaaactagttttt
agtgtattctcactccccgtcggtctagtcagtgcgcaattctttcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGATCGGTTTAAAAGGCGCATAAT 544 235 17 Antisense
GCGCATAATTTATTTTCGTGTCGAG 36 289 33 Antisense
GTCGAGACCTAAATTCTGGTAGGCT 338 473 52 Antisense
TCTGGTAGGCTACTGTAACATTGAA 584 607 66 Antisense
TATCTATTTTGTGTTTTCTTATTGG 313 659 116 Antisense
TTTGTGTTTTCTTATTGGTGCTCTC 411 665 123 Antisense
TATTGGTGCTCTCCTCATTTTATTA 689 665 135 Antisense
TGGTGCTCTCCTCATTTTATTAAAT 3 553 138 Antisense
GTTTTTAGTGTATTCTCACTCCCCG 292 447 191 Antisense
GGTCTAGTCAGTGCGCAATTCTTTC 283 503 218 Antisense
TAGTCAGTGCGCAATTCTTTCACTT 89 655 222 Antisense
Sequence Source Affymetrix Proprietary Database