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[175424_at]

Description AU114821_rc /REP_DB=TREMBL Accession /GB=AU114821 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 80      6grp_highest_nonorm > 61      6grp_total > 72      4grp_total > 55      6grp_highest_sub > 04      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 455
1 2 3 4 range
A 416.8
(3)
P 		64.7
(-2.2)
A 		171.2
(-0.6)
P 		7
(-3)
A 		410
B 449
(3)
P 		78.9
(-2)
A 		163.3
(-0.8)
P 		2.7
(-3)
A 		446
C 457
(3)
P 		91.3
(-1.8)
A 		116.6
(-1.5)
P 		1.9
(-3)
A 		455
avr 440.9
(3) 		78.3
(-2) 		150.4
(-1) 		3.9
(-3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 331.1
(0.2)
P 		371.4
(0.8)
P 		502.9
(3)
P 		491.6
(2.8)
P 		456.4
(2.2)
P 		138.2
(-3)
P 		365
B 315.5
(-0.9)
P 		387.3
(-0.1)
P 		675.5
(3)
P 		471.3
(0.8)
P 		556.6
(1.7)
P 		122.7
(-3)
P 		553
C 304.8
(-0.2)
P 		396.1
(1.1)
P 		481.2
(2.4)
P 		407.4
(1.3)
P 		523.1
(3)
P 		115
(-3)
P 		408
avr 317.1
(-0.3) 		384.9
(0.6) 		553.2
(3) 		456.8
(1.6) 		512
(2.4) 		125.3
(-3) 		428
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 151.8
(3)
P 		14.1
(-2.5)
A 		44.7
(-1.3)
P 		1
(-3)
A 		151
B 143.2
(3)
P 		19.5
(-2.2)
A 		37.8
(-1.4)
P 		0.6
(-3)
A 		143
C 151.3
(3)
P 		26.3
(-2)
A 		40.6
(-1.4)
P 		0.3
(-3)
A 		151
avr 148.8
(3) 		20
(-2.2) 		41
(-1.4) 		0.6
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 61
(-1.4)
P 		132.1
(2.7)
P 		109.5
(1.4)
P 		124.7
(2.3)
P 		137.7
(3)
P 		33.7
(-3)
P 		104
B 109.8
(-0.9)
P 		128.9
(-0.2)
P 		164
(0.9)
P 		124.8
(-0.4)
P 		226.1
(3)
P 		45.8
(-3)
P 		180
C 113
(0.4)
P 		120.9
(0.8)
P 		122.5
(0.9)
P 		81.9
(-1)
P 		169.3
(3)
P 		38.5
(-3)
P 		131
avr 94.6
(-0.6) 		127.3
(0.8) 		132
(1) 		110.5
(0.1) 		177.7
(3) 		39.3
(-3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175424_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21177
Sequence Type Exemplar sequence
Representative Public ID AU114821 NCBI
Target Description AU114821_rc /REP_DB=TREMBL Accession /GB=AU114821 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066651 NCBI Caenorhabditis elegans C40H1.7 (C40H1.7) mRNA, complete cds. 11/11 None
SNAP00000000785 ENSEMBL cdna:SNAP chromosome:CEL140:III:9324976:9326890:1 11/11 None
GENEFINDER00000000792 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9324976:9327029:1 11/11 None
C40H1.7 ENSEMBL cdna:known chromosome:CEL140:III:9324961:9327033:1 gene:C40H1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9326526-9326857(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40H1.7
Entrez Gene 176311 Entrez gene
SwissProt Q9BIA1 EMBL-EBI
WormBase CE33603 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35885 Hypothetical protein C40H1.7 [Caenorhabditis elegans] ref|NP_499052.2| C40H1.7 [Caenorhabditis elegans] 0.0
blast CAE17740 Hypothetical protein C40H1.8 [Caenorhabditis elegans] ref|NP_001021213.1| C40H1.8 [Caenorhabditis elegans] 2.0E-79
blast CAE65245 Hypothetical protein CBG10128 [Caenorhabditis briggsae] 3.0E-77
blast CAE17740 Hypothetical protein C40H1.8 [Caenorhabditis elegans] ref|NP_001021213.1| C40H1.8 [Caenorhabditis elegans] 7.0E-75
blast CAE65239 Hypothetical protein CBG10122 [Caenorhabditis briggsae] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 4.7E-54
Pfam IPR002921 EMBL-EBI Lipase, class 3 4.7E-54
Pfam IPR002921 EMBL-EBI Lipase, class 3 3.8E-29
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.4E-5
Sequence
Target Sequence 
>C. ELEGANS:175424_AT
cacaacactttatcacccacgaagtgaagtttggtacaacaatgatatgcgtgaaggcga
ctcttttgtcatttgcgagcaagcagatcaaccgttttgcagcagtcaggtgcagaacct
gtcaaatgccgaccatgcacattattttaatatggacttgtacagatggtcagctgatgg
atgtccgaagaataaggaagattacaggccaattgcagagagtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAACACTTTATCACCCACGAAGT 492 187 20 Antisense
GATATGCGTGAAGGCGACTCTTTTG 305 425 63 Antisense
GCGACTCTTTTGTCATTTGCGAGCA 420 289 76 Antisense
TGCGAGCAAGCAGATCAACCGTTTT 590 581 93 Antisense
AGATCAACCGTTTTGCAGCAGTCAG 200 65 104 Antisense
GCAGCAGTCAGGTGCAGAACCTGTC 166 311 118 Antisense
AGAACCTGTCAAATGCCGACCATGC 504 73 133 Antisense
AATGCCGACCATGCACATTATTTTA 62 167 144 Antisense
ATGGACTTGTACAGATGGTCAGCTG 649 51 171 Antisense
GATGGTCAGCTGATGGATGTCCGAA 576 407 184 Antisense
ATTACAGGCCAATTGCAGAGAGTGC 431 11 220 Antisense
Sequence Source Affymetrix Proprietary Database