[Home] | [Total List]

[175423_at]

Description AV182292_rc /REP_DB=TREMBL Accession /GB=AV182292 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk635g2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 26      6grp_total > 33      4grp_total > 37      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 75.5
(1.8)
P 		83.8
(3)
P 		43.7
(-3)
P 		66
(0.3)
A 		40
B 85.8
(3)
P 		73.4
(0.2)
P 		58.9
(-3)
P 		64.2
(-1.8)
P 		27
C 89.6
(3)
P 		49.5
(-3)
P 		51.9
(-2.6)
P 		61.8
(-1.2)
A 		40
avr 83.6
(3) 		68.9
(0.3) 		51.5
(-3) 		64
(-0.7) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 75.2
(1.6)
P 		76.2
(1.7)
P 		95.2
(3)
P 		22.3
(-2)
A 		41.7
(-0.7)
P 		7.7
(-3)
A 		88
B 89.4
(2)
P 		42.3
(-3)
P 		73.4
(0.3)
P 		99.2
(3)
P 		63.5
(-0.8)
P 		50.7
(-2.1)
P 		57
C 128.2
(3)
P 		49.6
(-3)
P 		65.1
(-1.8)
P 		57.8
(-2.3)
P 		61.9
(-2)
P 		49
(-3)
P 		79
avr 97.6
(3) 		56
(-1) 		77.9
(1.1) 		59.8
(-0.7) 		55.7
(-1.1) 		35.8
(-3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 27.5
(3)
P 		18.2
(-0.1)
P 		11.4
(-2.4)
P 		9.7
(-3)
A 		18
B 27.4
(3)
P 		18.1
(-1)
P 		13.6
(-3)
P 		13.7
(-3)
P 		14
C 29.6
(3)
P 		14.2
(-1.8)
P 		18.1
(-0.6)
P 		10.4
(-3)
A 		19
avr 28.2
(3) 		16.8
(-1) 		14.4
(-1.9) 		11.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 13.9
(-0.1)
P 		27.1
(3)
P 		20.7
(1.5)
P 		5.6
(-2.1)
A 		12.6
(-0.5)
P 		1.9
(-3)
A 		25
B 31.1
(3)
P 		14.1
(-3)
P 		17.8
(-1.7)
P 		26.3
(1.3)
P 		25.8
(1.1)
P 		18.9
(-1.3)
P 		17
C 47.5
(3)
P 		15.1
(-2.4)
P 		16.6
(-2.2)
P 		11.6
(-3)
P 		20
(-1.6)
P 		16.4
(-2.2)
P 		36
avr 30.8
(3) 		18.8
(-0.9) 		18.4
(-1) 		14.5
(-2.3) 		19.5
(-0.7) 		12.4
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20261
Sequence Type Exemplar sequence
Representative Public ID AV182292 NCBI
Target Description AV182292_rc /REP_DB=TREMBL Accession /GB=AV182292 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk635g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060038 NCBI Caenorhabditis elegans T06D10.1 (T06D10.1) mRNA, complete cds. 11/11 None
T06D10.1.1 ENSEMBL cdna:known chromosome:CEL140:I:9078385:9083201:-1 gene:T06D10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9078373-9078682(-) 90.94 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D10.1
Entrez Gene 172729 Entrez gene
SwissProt Q9U379 EMBL-EBI
WormBase CE25101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63307 Hypothetical protein T06D10.1 [Caenorhabditis elegans] ref|NP_492439.1| T06D10.1 [Caenorhabditis elegans] 1.0E-93
blast CAE67034 Hypothetical protein CBG12436 [Caenorhabditis briggsae] 9.0E-92
Sequence
Target Sequence 
>C. ELEGANS:175423_AT
atcgatcgataatcaacatttccgttttatttacatcatcaaagctcaaaaaatataata
tattcatttcatacctgttggcgcctgacctttcccggaaaatttaaagtttttattata
ataataggcataatttcttccctcaaattacaaaataatgtctttttttgcataattttt
tcctctttctcaacatttttcatgaattttttttctgaaaatttgtacatcgtatcaatg
tatttttgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGATCGATAATCAACATTTCCGT 228 33 40 Antisense
ACATTTCCGTTTTATTTACATCATC 116 105 55 Antisense
TTTATTTACATCATCAAAGCTCAAA 131 675 65 Antisense
ATTCATTTCATACCTGTTGGCGCCT 616 11 101 Antisense
ATAGGCATAATTTCTTCCCTCAAAT 509 21 163 Antisense
TTCTTCCCTCAAATTACAAAATAAT 104 691 174 Antisense
AAATAATGTCTTTTTTTGCATAATT 385 117 192 Antisense
TTCCTCTTTCTCAACATTTTTCATG 133 701 219 Antisense
TTCTCAACATTTTTCATGAATTTTT 397 691 226 Antisense
CTGAAAATTTGTACATCGTATCAAT 285 239 254 Antisense
CATCGTATCAATGTATTTTTGTGCA 179 213 267 Antisense
Sequence Source Affymetrix Proprietary Database