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[175421_at]

Description AV185527_rc /REP_DB=TREMBL Accession /GB=AV185527 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk679d7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 94      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_total > 74      4grp_total > 01      6grp_cgc > 65      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 116
(-3)
P 		122.6
(-2.8)
P 		194.1
(-0.1)
P 		279.9
(3)
P 		164
B 140.7
(-0.8)
P 		92.4
(-3)
P 		160.5
(0.1)
P 		223.4
(3)
P 		131
C 167.5
(-1.3)
P 		137.7
(-2.7)
P 		132.2
(-3)
P 		256.7
(3)
P 		125
avr 141.4
(-1.9) 		117.6
(-3) 		162.3
(-1) 		253.3
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 106.7
(-0.2)
A 		81.8
(-3)
P 		114.6
(0.7)
P 		93.8
(-1.7)
M 		135.2
(3)
P 		86.8
(-2.4)
A 		53
B 41.2
(-3)
A 		150.6
(2.6)
P 		101.5
(0.1)
P 		159.2
(3)
P 		104.7
(0.2)
P 		139.2
(2)
P 		118
C 47.9
(-3)
P 		149.3
(3)
P 		123.3
(1.5)
M 		130.6
(1.9)
P 		84.9
(-0.8)
P 		128.8
(1.8)
P 		101
avr 65.3
(-3) 		127.2
(2.9) 		113.1
(1.6) 		127.9
(3) 		108.3
(1.1) 		118.3
(2.1) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 42.2
(0.9)
P 		26.6
(-3)
P 		50.7
(3)
P 		41
(0.6)
P 		24
B 44.9
(2.3)
P 		22.8
(-3)
P 		37.2
(0.5)
P 		47.6
(3)
P 		25
C 55.4
(3)
P 		39.6
(-3)
P 		46.1
(-0.5)
P 		43.3
(-1.6)
P 		16
avr 47.5
(3) 		29.7
(-3) 		44.7
(2.1) 		44
(1.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 19.7
(-3)
A 		29.1
(-0.3)
P 		25
(-1.5)
P 		23.8
(-1.8)
M 		40.8
(3)
P 		21.1
(-2.6)
A 		21
B 14.3
(-3)
A 		50.1
(2.7)
P 		24.7
(-1.3)
P 		42.2
(1.5)
P 		42.5
(1.5)
P 		51.9
(3)
P 		38
C 17.8
(-3)
P 		45.6
(3)
P 		31.4
(-0.1)
M 		26.3
(-1.2)
P 		27.5
(-0.9)
P 		43.1
(2.5)
P 		28
avr 17.3
(-3) 		41.6
(3) 		27
(-0.6) 		30.8
(0.3) 		36.9
(1.8) 		38.7
(2.3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21176
Sequence Type Exemplar sequence
Representative Public ID AV185527 NCBI
Target Description AV185527_rc /REP_DB=TREMBL Accession /GB=AV185527 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk679d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV185527
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV185527 AV185527_rc /REP_DB=TREMBL Accession /GB=AV185527 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk679d7 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065417 11/11 Negative Strand Matching Probes None
C03C10.1.1 11/11 Negative Strand Matching Probes A 
C03C10.1.3 11/11 Negative Strand Matching Probes None
C03C10.1.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4084067-4084347(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175421_AT
gaacggagtggggctctgatttctgggtggggaagttatgggagggtattgagaggcatt
tggagccaaaagagagggggtgggtgtgtcaaggtgagccggttatacccaaaaacatgt
tcggccacttgactttttcagtattttttttaatttttgagtgcccgacattgggacatt
ttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGGAGTGGGGCTCTGATTTCTG 542 345 78 Antisense
GGCTCTGATTTCTGGGTGGGGAAGT 170 383 89 Antisense
GTGGGGAAGTTATGGGAGGGTATTG 553 477 104 Antisense
GAGGGTATTGAGAGGCATTTGGAGC 577 401 119 Antisense
GAGAGGGGGTGGGTGTGTCAAGGTG 30 395 149 Antisense
GTGTCAAGGTGAGCCGGTTATACCC 155 443 163 Antisense
GAGCCGGTTATACCCAAAAACATGT 635 383 173 Antisense
AAAAACATGTTCGGCCACTTGACTT 583 129 188 Antisense
TCGGCCACTTGACTTTTTCAGTATT 204 607 198 Antisense
TTTTTAATTTTTGAGTGCCCGACAT 301 1 224 Antisense
GAGTGCCCGACATTGGGACATTTTC 6 401 236 Antisense
Sequence Source Affymetrix Proprietary Database