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[175420_at] Mouse MO25 protein like

Description AU113697_rc /REP_DB=TREMBL Accession /GB=AU113697 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 73      6grp_total > 95      4grp_total > 62      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 616.4
(3)
P 		471.4
(-0.2)
P 		579.2
(2.2)
P 		347.8
(-3)
P 		269
B 578.7
(3)
P 		454.7
(-3)
P 		532
(0.7)
P 		475.9
(-2)
P 		124
C 665.3
(3)
P 		521
(0)
P 		582.4
(1.3)
P 		372.7
(-3)
P 		293
avr 620.1
(3) 		482.4
(-0.7) 		564.5
(1.5) 		398.8
(-3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 285.5
(-3)
P 		578.7
(1.9)
P 		392.5
(-1.2)
P 		363.8
(-1.7)
P 		644.9
(3)
P 		623.3
(2.6)
P 		359
B 593.1
(2.4)
P 		557.8
(1.3)
P 		422.8
(-3)
P 		575.9
(1.8)
P 		612.3
(3)
P 		524.4
(0.2)
P 		190
C 489
(-1.3)
P 		469.4
(-2.1)
P 		448.5
(-3)
P 		593.2
(3)
P 		488.6
(-1.3)
P 		533.3
(0.5)
P 		145
avr 455.9
(-1.7) 		535.3
(1.3) 		421.3
(-3) 		511
(0.4) 		581.9
(3) 		560.3
(2.2) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 224.4
(3)
P 		102.3
(-1.2)
P 		151.4
(0.5)
P 		50.9
(-3)
P 		174
B 184.5
(3)
P 		112.3
(-2.2)
P 		123.3
(-1.4)
P 		101.4
(-3)
P 		83
C 220.2
(3)
P 		149.8
(0.3)
P 		203
(2.3)
P 		62.8
(-3)
P 		157
avr 209.7
(3) 		121.5
(-0.8) 		159.2
(0.8) 		71.7
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 52.6
(-3)
P 		205.8
(3)
P 		85.5
(-1.7)
P 		92.3
(-1.4)
P 		194.6
(2.6)
P 		151.8
(0.9)
P 		153
B 206.4
(1.3)
P 		185.7
(0.4)
P 		102.7
(-3)
P 		152.5
(-1)
P 		248.8
(3)
P 		195.5
(0.8)
P 		146
C 181.2
(3)
P 		143.2
(-0.4)
P 		114.2
(-3)
P 		119.3
(-2.5)
P 		158.1
(0.9)
P 		178.5
(2.8)
P 		67
avr 146.7
(-0.2) 		178.2
(1.7) 		100.8
(-3) 		121.4
(-1.8) 		200.5
(3) 		175.3
(1.5) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20503
Sequence Type Exemplar sequence
Representative Public ID AU113697 NCBI
Target Description AU113697_rc /REP_DB=TREMBL Accession /GB=AU113697 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063691 NCBI Caenorhabditis elegans Y53C12A.4 (Y53C12A.4) mRNA, complete cds. 11/11 None
Y53C12A.4.1 ENSEMBL cdna:known chromosome:CEL140:II:9701323:9703643:-1 gene:Y53C12A.4 11/11 None
Y53C12A.4.2 ENSEMBL cdna:known chromosome:CEL140:II:9701323:9703612:-1 gene:Y53C12A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9701451-9701731(-) 100.0 100.0
Public Domain and Genome References
Gene Title Mouse MO25 protein like
Ensembl Y53C12A.4
Entrez Gene 174527 Entrez gene
SwissProt O18211 EMBL-EBI
WormBase CE14890 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19170_AT Mo25 family protein at
ATH1-121501:245279_AT Mo25 family protein at
CANINE:1595898_AT similar to Calcium binding protein 39 (Mo25 protein) cfa
CANINE_2:CFA.18698.1.S1_AT similar to Calcium binding protein 39 (Mo25 protein) cfa
CANINE_2:CFAAFFX.16790.1.S1_AT similar to Calcium binding protein 39 (Mo25 protein) cfa
CANINE_2:CFAAFFX.16790.1.S1_S_AT similar to Calcium binding protein 39 (Mo25 protein) cfa
CHICKEN:GGA.5476.1.S1_AT similar to MO25 protein (CGI-66) gga
HG-U133_PLUS_2:224311_S_AT calcium binding protein 39 hs
HG-U133B:224311_S_AT calcium binding protein 39 hs
HU35KSUBA:RC_AA258576_AT calcium binding protein 39 hs
HU35KSUBA:H83753_AT calcium binding protein 39 hs
HU35KSUBC:RC_AA252676_AT calcium binding protein 39 hs
HG-U133A:217873_AT calcium binding protein 39 hs
HG-U133_PLUS_2:217873_AT calcium binding protein 39 hs
HG-FOCUS:217873_AT calcium binding protein 39 hs
HG-U133A_2:217873_AT calcium binding protein 39 hs
U133_X3P:G7706480_3P_AT calcium binding protein 39 hs
U133_X3P:G4929600_3P_A_AT calcium binding protein 39 hs
HG-U95B:46225_AT calcium binding protein 39 hs
HG-U95E:70597_AT Calcium binding protein 39 hs
HU35KSUBA:AA434013_AT Calcium binding protein 39 hs
MU11KSUBA:AA415604_AT calcium binding protein 39 mm
MU11KSUBA:AA415604_G_AT calcium binding protein 39 mm
MG-U74AV2:93976_AT calcium binding protein 39 mm
MOE430A:1418432_AT calcium binding protein 39 mm
MOUSE430A_2:1418432_AT calcium binding protein 39 mm
MOUSE430_2:1418432_AT calcium binding protein 39 mm
MOE430A:1418433_AT calcium binding protein 39 mm
MOUSE430A_2:1418433_AT calcium binding protein 39 mm
MOUSE430_2:1418433_AT calcium binding protein 39 mm
MU19KSUBA:TC22391_AT Calcium binding protein 39, mRNA (cDNA clone IMAGE:4952585) mm
MU19KSUBB:TC34239_AT Calcium binding protein 39, mRNA (cDNA clone IMAGE:4952585) mm
MU19KSUBC:TC38689_AT Calcium binding protein 39, mRNA (cDNA clone IMAGE:4952585) mm
MU19KSUBC:TC39514_AT Calcium binding protein 39, mRNA (cDNA clone IMAGE:4952585) mm
RG-U34B:RC_AA849965_AT calcium binding protein 39 (predicted) rn
RG-U34B:RC_AA851776_AT calcium binding protein 39 (predicted) rn
RG-U34B:RC_AA945088_AT calcium binding protein 39 (predicted) rn
RAE230A:1372244_AT calcium binding protein 39 (predicted) rn
RAT230_2:1372244_AT calcium binding protein 39 (predicted) rn
RAE230A:1372243_AT calcium binding protein 39 (predicted) rn
RAT230_2:1372243_AT calcium binding protein 39 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB16486 Hypothetical protein Y53C12A.4 [Caenorhabditis elegans] ref|NP_496092.1| Y53C12A.4 [Caenorhabditis elegans] sp|O18211|MO25M_CAEEL Hypothetical MO25-like protein Y53C12A.4 in chromosome II 0.0
blast CAE57989 Hypothetical protein CBG01052 [Caenorhabditis briggsae] 0.0
blast AAA96186 Hypothetical protein R02E12.2a [Caenorhabditis elegans] ref|NP_001024819.1| R02E12.2a [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175420_AT
gggggttactgtagctataatattaagatacagtagtacctccccgccctccaatcgcca
aaaattttgttccatccacacctcgctttaggcatcgatctttaccgtctttctctgcaa
acaaaatataatcgttcctttaaaagaatcccccatattaaaatcatgtacgaatacaaa
aatatccatccccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGGTTACTGTAGCTATAATATTA 87 499 32 Antisense
TTAAGATACAGTAGTACCTCCCCGC 524 683 54 Antisense
CGCCCTCCAATCGCCAAAAATTTTG 92 257 76 Antisense
CAAAAATTTTGTTCCATCCACACCT 652 189 90 Antisense
ACCTCGCTTTAGGCATCGATCTTTA 158 89 111 Antisense
TTAGGCATCGATCTTTACCGTCTTT 354 681 119 Antisense
TTACCGTCTTTCTCTGCAAACAAAA 299 679 133 Antisense
GCAAACAAAATATAATCGTTCCTTT 571 287 148 Antisense
AAAGAATCCCCCATATTAAAATCAT 28 105 174 Antisense
ATCCCCCATATTAAAATCATGTACG 472 37 179 Antisense
GAATACAAAAATATCCATCCCCTTT 194 325 203 Antisense
Sequence Source Affymetrix Proprietary Database