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[175418_s_at]

Description AV180594_rc /REP_DB=TREMBL Accession /GB=AV180594 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk609e3 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 43.4
(-3)
A 		61.5
(-2.1)
A 		66.2
(-1.8)
A 		158.1
(3)
P 		115
B 42.9
(-3)
A 		47.9
(-2.8)
A 		58.5
(-2.4)
A 		192.4
(3)
P 		150
C 34.7
(-2.4)
A 		18.2
(-3)
A 		70.2
(-1.1)
P 		180.8
(3)
P 		163
avr 40.3
(-3) 		42.5
(-2.9) 		65
(-1.9) 		177.1
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 823
1 2 3 4 5 6 range
A 80.9
(-2.8)
A 		60
(-3)
A 		131.4
(-2.2)
P 		148.3
(-2)
P 		285.1
(-0.5)
P 		606.4
(3)
P 		546
B 56.5
(-2.9)
A 		46.6
(-3)
A 		74.5
(-2.8)
P 		147.2
(-2.2)
P 		321.7
(-0.9)
P 		829.8
(3)
P 		783
C 46
(-3)
A 		59.6
(-2.9)
A 		55.1
(-2.9)
A 		113.7
(-2.5)
P 		336.5
(-0.9)
P 		869.1
(3)
P 		823
avr 61.1
(-3) 		55.4
(-3) 		87
(-2.7) 		136.4
(-2.3) 		314.4
(-0.8) 		768.4
(3) 		713
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 15.8
(-1.5)
A 		13.3
(-3)
A 		17.3
(-0.6)
A 		23.1
(3)
P 		10
B 13.7
(-2.6)
A 		11.8
(-3)
A 		13.5
(-2.7)
A 		41
(3)
P 		29
C 11.5
(-1.5)
A 		5.2
(-3)
A 		24.5
(1.6)
P 		30.5
(3)
P 		25
avr 13.7
(-2) 		10.1
(-3) 		18.4
(-0.7) 		31.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 14.9
(-3)
A 		21.3
(-2.7)
A 		28.6
(-2.4)
P 		37.6
(-2)
P 		86
(0.2)
P 		147.6
(3)
P 		133
B 19.7
(-2.9)
A 		15.5
(-3)
A 		18.1
(-2.9)
P 		39
(-2.5)
P 		130.7
(-0.6)
P 		309.4
(3)
P 		294
C 17
(-2.9)
A 		18.2
(-2.9)
A 		14
(-3)
A 		22.9
(-2.8)
P 		108.9
(-0.9)
P 		290.9
(3)
P 		277
avr 17.2
(-3) 		18.3
(-3) 		20.2
(-2.9) 		33.2
(-2.6) 		108.5
(-0.6) 		249.3
(3) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175418_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20571
Sequence Type Exemplar sequence
Representative Public ID AV180594 NCBI
Target Description AV180594_rc /REP_DB=TREMBL Accession /GB=AV180594 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk609e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064598 NCBI Caenorhabditis elegans F26H11.4 (F26H11.4) mRNA, complete cds. 11/11 A 
SNAP00000043655 ENSEMBL cdna:SNAP chromosome:CEL140:II:14410992:14412021:1 11/11 None
GENEFINDER00000043657 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14408641:14412021:1 11/11 None
F26H11.4 ENSEMBL cdna:known chromosome:CEL140:II:14408641:14412045:1 gene:F26H11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14411683-14412032(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26H11.4
Entrez Gene 175099 Entrez gene
SwissProt O45408 EMBL-EBI
WormBase CE15911 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04196 Hypothetical protein F26H11.4 [Caenorhabditis elegans] ref|NP_496999.1| F26H11.4 [Caenorhabditis elegans] 0.0
blast CAB04196 Hypothetical protein F26H11.4 [Caenorhabditis elegans] ref|NP_496999.1| F26H11.4 [Caenorhabditis elegans] 1.0E-150
blast CAE57925 Hypothetical protein CBG00978 [Caenorhabditis briggsae] 3.0E-31
blast CAE60289 Hypothetical protein CBG03873 [Caenorhabditis briggsae] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:175418_S_AT
tctctaagcgttgaagtagccgacaaatgcattcaaactgaggatttggtcgatttgctg
gctgacgatgagtattgcatgcgaaaagcactgaggaaaatgatcgaaaacccaagtttt
atcaaagccgtcgctgctgcagaaaatacactgcagtatattccacaagcggaacaagag
ggattggaagatgtcaccgaaccaccaataaacgatatattctttgatcgttttcatcaa
ccacagcttgagcaacacgattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTAAGCGTTGAAGTAGCCGACA 109 611 21 Antisense
GTAGCCGACAAATGCATTCAAACTG 394 457 36 Antisense
GAGGATTTGGTCGATTTGCTGGCTG 621 403 60 Antisense
GGCTGACGATGAGTATTGCATGCGA 54 535 80 Antisense
CAAGTTTTATCAAAGCCGTCGCTGC 518 183 133 Antisense
CACTGCAGTATATTCCACAAGCGGA 216 199 169 Antisense
GAGGGATTGGAAGATGTCACCGAAC 313 401 198 Antisense
AGATGTCACCGAACCACCAATAAAC 409 67 209 Antisense
GATATATTCTTTGATCGTTTTCATC 307 427 234 Antisense
TGATCGTTTTCATCAACCACAGCTT 700 565 245 Antisense
AACCACAGCTTGAGCAACACGATTC 474 147 259 Antisense
Sequence Source Affymetrix Proprietary Database