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[175417_s_at]

Description AV180215_rc /REP_DB=TREMBL Accession /GB=AV180215 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk604b3 : 3prime end, single read.
Cluster 4grp_high_8_8 > 23      6grp_total > 87      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 40.1
(-3)
P 		86.5
(3)
A 		62
(-0.2)
P 		65.7
(0.3)
A 		46
B 38.6
(-2.8)
A 		45.1
(-1.8)
P 		37.2
(-3)
A 		78.4
(3)
P 		41
C 43.9
(-3)
P 		45.3
(-2.7)
A 		51.7
(-1.1)
P 		67.9
(3)
P 		24
avr 40.9
(-3) 		59
(0.6) 		50.3
(-1.1) 		70.7
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 37
(-3)
A 		62.6
(-2.2)
M 		85.3
(-1.4)
P 		93
(-1.2)
P 		133.5
(0.1)
P 		223.4
(3)
P 		186
B 45.3
(-2.9)
A 		42.9
(-3)
P 		84.2
(-1.9)
P 		51.9
(-2.8)
P 		138.1
(-0.5)
P 		276
(3)
P 		233
C 23.2
(-3)
A 		71.5
(-1.9)
P 		50.5
(-2.4)
A 		84.1
(-1.6)
P 		133.2
(-0.4)
P 		275.9
(3)
P 		253
avr 35.2
(-3) 		59
(-2.4) 		73.3
(-2) 		76.3
(-1.9) 		134.9
(-0.3) 		258.4
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 14.6
(0.3)
P 		18.8
(3)
A 		16.2
(1.3)
P 		9.6
(-3)
A 		9
B 12.3
(-0.3)
A 		11.1
(-1.1)
P 		8.6
(-3)
A 		16.7
(3)
P 		8
C 14.5
(-0.2)
P 		13
(-1.5)
A 		18
(3)
P 		11.4
(-3)
P 		7
avr 13.8
(1.2) 		14.3
(3) 		14.3
(3) 		12.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 6.8
(-3)
A 		22.3
(-1)
M 		18.6
(-1.5)
P 		23.6
(-0.9)
P 		40.3
(1.2)
P 		54.4
(3)
P 		48
B 15.8
(-2.9)
A 		14.3
(-3)
P 		20.4
(-2.6)
P 		13.8
(-3)
P 		56.1
(-0.2)
P 		102.9
(3)
P 		89
C 8.6
(-3)
A 		21.8
(-2.1)
P 		12.8
(-2.7)
A 		16.9
(-2.4)
P 		43.1
(-0.5)
P 		92.4
(3)
P 		84
avr 10.4
(-3) 		19.5
(-2.3) 		17.3
(-2.4) 		18.1
(-2.4) 		46.5
(-0) 		83.2
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175417_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20895
Sequence Type Exemplar sequence
Representative Public ID AV180215 NCBI
Target Description AV180215_rc /REP_DB=TREMBL Accession /GB=AV180215 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk604b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066224 NCBI Caenorhabditis elegans F08F8.4 (F08F8.4) mRNA, complete cds. 11/11 None
SNAP00000010814 ENSEMBL cdna:SNAP chromosome:CEL140:III:7357753:7358985:-1 11/11 None
GENEFINDER00000010820 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7357753:7358985:-1 11/11 None
F08F8.4 ENSEMBL cdna:known chromosome:CEL140:III:7357583:7358991:-1 gene:F08F8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7357657-7357985(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08F8.4
Entrez Gene 176046 Entrez gene
SwissProt Q19206 EMBL-EBI
WormBase CE27932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68308 Hypothetical protein F08F8.4 [Caenorhabditis elegans] ref|NP_498625.1| F08F8.4 [Caenorhabditis elegans] 0.0
blast AAK68308 Hypothetical protein F08F8.4 [Caenorhabditis elegans] ref|NP_498625.1| F08F8.4 [Caenorhabditis elegans] 1.0E-163
blast CAE69250 Hypothetical protein CBG15297 [Caenorhabditis briggsae] 3.0E-77
blast T15978 hypothetical protein F08F8.4 - Caenorhabditis elegans 1.0E-75
Sequence
Target Sequence 
>C. ELEGANS:175417_S_AT
gaaaggtgttgctaactctcttctggatgctgcaacaactcaagatcgtcaaatggaatt
ccgatcgagacgtcttagaattgcgttttgtgatccaacggatgacggaatcaaattggc
tagacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGGTGTTGCTAACTCTCTTCTG 638 359 13 Antisense
TGCTAACTCTCTTCTGGATGCTGCA 246 579 22 Antisense
CTCTCTTCTGGATGCTGCAACAACT 221 231 28 Antisense
TGCTGCAACAACTCAAGATCGTCAA 195 583 40 Antisense
ACTCAAGATCGTCAAATGGAATTCC 243 81 50 Antisense
ATGGAATTCCGATCGAGACGTCTTA 234 43 65 Antisense
CCGATCGAGACGTCTTAGAATTGCG 583 263 73 Antisense
GTCTTAGAATTGCGTTTTGTGATCC 542 465 84 Antisense
ATTGCGTTTTGTGATCCAACGGATG 260 7 92 Antisense
GATCCAACGGATGACGGAATCAAAT 264 415 104 Antisense
GACGGAATCAAATTGGCTAGACGAT 489 369 116 Antisense
Sequence Source Affymetrix Proprietary Database