[Home] | [Total List]

[175416_at]

Description AV184810_rc /REP_DB=TREMBL Accession /GB=AV184810 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk669g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 63      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 74      6grp_total > 53      4grp_total > 47      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 627
1 2 3 4 range
A 871.4
(3)
P 		292.9
(-3)
P 		434.8
(-1.5)
P 		411.7
(-1.8)
P 		579
B 919.5
(3)
P 		385.1
(-3)
P 		381.8
(-3)
P 		492
(-1.8)
P 		538
C 881.6
(3)
P 		406.5
(-3)
P 		542.8
(-1.3)
P 		484.1
(-2)
P 		475
avr 890.8
(3) 		361.5
(-3) 		453.1
(-2) 		462.6
(-1.9) 		529

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 682.4
(0.3)
P 		639.9
(-0.6)
P 		823.1
(3)
P 		563.7
(-2)
P 		763.3
(1.8)
P 		514.3
(-3)
P 		309
B 720.5
(-0.2)
P 		602.7
(-3)
P 		857.5
(3)
P 		839.6
(2.6)
P 		729
(-0)
P 		678.7
(-1.2)
P 		255
C 654.2
(-1.9)
P 		674.7
(-1.2)
P 		797.2
(3)
P 		647.7
(-2.1)
P 		622.2
(-3)
P 		761.7
(1.8)
P 		175
avr 685.7
(-1.5) 		639.1
(-3) 		825.9
(3) 		683.7
(-1.6) 		704.8
(-0.9) 		651.6
(-2.6) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 317.3
(3)
P 		63.6
(-2.9)
P 		113.7
(-1.8)
P 		60.3
(-3)
P 		257
B 293.2
(3)
P 		95.1
(-2.8)
P 		88.5
(-3)
P 		104.8
(-2.5)
P 		205
C 291.8
(3)
P 		116.9
(-2)
P 		189.2
(0.1)
P 		81.6
(-3)
P 		210
avr 300.8
(3) 		91.9
(-2.7) 		130.5
(-1.7) 		82.2
(-3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 125.8
(-3)
P 		227.6
(2.8)
P 		179.2
(0.1)
P 		143
(-2)
P 		230.3
(3)
P 		125.2
(-3)
P 		105
B 250.7
(0.1)
P 		200.6
(-3)
P 		208.2
(-2.5)
P 		222.4
(-1.6)
P 		296.2
(3)
P 		253.1
(0.3)
P 		96
C 242.5
(2.4)
P 		205.9
(0.6)
P 		202.9
(0.5)
P 		130.2
(-3)
P 		201.3
(0.4)
P 		255
(3)
P 		125
avr 206.3
(0.2) 		211.4
(0.6) 		196.8
(-0.6) 		165.2
(-3) 		242.6
(3) 		211.1
(0.6) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20305
Sequence Type Exemplar sequence
Representative Public ID AV184810 NCBI
Target Description AV184810_rc /REP_DB=TREMBL Accession /GB=AV184810 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk669g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059736 NCBI Caenorhabditis elegans T24B1.1 (T24B1.1) mRNA, complete cds. 11/11 None
T24B1.1 ENSEMBL cdna:known chromosome:CEL140:I:7684795:7687188:1 gene:T24B1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027643 4/11 Cross Hyb Matching Probes None
GENEFINDER00000027662 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7686733-7687014(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24B1.1
Entrez Gene 172527 Entrez gene
WormBase CE27210 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256123_AT expressed protein at
CANINE:1589292_AT similar to Golgi autoantigen, golgin subfamily A member 5 (Golgin-84) (RET-fused gene 5 protein) (Ret-II protein) cfa
CANINE:1588729_AT similar to Golgi autoantigen, golgin subfamily A member 5 (Golgin-84) (RET-fused gene 5 protein) (Ret-II protein) cfa
CANINE_2:CFA.10285.1.S1_AT similar to Golgi autoantigen, golgin subfamily A member 5 (Golgin-84) (RET-fused gene 5 protein) (Ret-II protein) cfa
CANINE_2:CFA.15504.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily A member 5 (Golgin-84) (RET-fused gene 5 protein) (Ret-II protein) cfa
CANINE_2:CFAAFFX.17247.1.S1_AT similar to Golgi autoantigen, golgin subfamily A member 5 (Golgin-84) (RET-fused gene 5 protein) (Ret-II protein) cfa
DROSOPHILA_2:1632897_AT dm
DROSGENOME1:150502_AT dm
CHICKEN:GGA.11349.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily A member 5 (Golgin-84) (RET-fused gene 5 protein) (Ret-II protein) gga
CHICKEN:GGAAFFX.23329.1.S1_AT similar to Golgi autoantigen, golgin subfamily A member 5 (Golgin-84) (RET-fused gene 5 protein) (Ret-II protein) gga
HG-U133_PLUS_2:218241_AT golgi autoantigen, golgin subfamily a, 5 hs
HG-U133A:218241_AT golgi autoantigen, golgin subfamily a, 5 hs
HG-FOCUS:218241_AT golgi autoantigen, golgin subfamily a, 5 hs
HG-U133A_2:218241_AT golgi autoantigen, golgin subfamily a, 5 hs
HU35KSUBD:RC_AA405331_AT golgi autoantigen, golgin subfamily a, 5 hs
HU35KSUBD:RC_AA235507_AT golgi autoantigen, golgin subfamily a, 5 hs
U133_X3P:G4826747_3P_AT golgi autoantigen, golgin subfamily a, 5 hs
HG-U95B:50346_AT golgi autoantigen, golgin subfamily a, 5 hs
HG-U95B:51826_AT Golgi autoantigen, golgin subfamily a, 5 hs
HG-U95C:55701_AT Golgi autoantigen, golgin subfamily a, 5 hs
MG-U74AV2:103808_AT golgi autoantigen, golgin subfamily a, 5 mm
MOE430A:1418447_AT golgi autoantigen, golgin subfamily a, 5 mm
MOUSE430A_2:1418447_AT golgi autoantigen, golgin subfamily a, 5 mm
MOUSE430_2:1418447_AT golgi autoantigen, golgin subfamily a, 5 mm
MU19KSUBA:TC24003_AT Golgi autoantigen, golgin subfamily a, 5, mRNA (cDNA clone MGC:18341 IMAGE:4235952) mm
MU19KSUBC:TC35499_AT Golgi autoantigen, golgin subfamily a, 5, mRNA (cDNA clone MGC:18341 IMAGE:4235952) mm
MU19KSUBC:TC35507_AT Golgi autoantigen, golgin subfamily a, 5, mRNA (cDNA clone MGC:18341 IMAGE:4235952) mm
MU19KSUBC:TC35507_G_AT Golgi autoantigen, golgin subfamily a, 5, mRNA (cDNA clone MGC:18341 IMAGE:4235952) mm
MU19KSUBC:TC35565_AT Golgi autoantigen, golgin subfamily a, 5, mRNA (cDNA clone MGC:18341 IMAGE:4235952) mm
RAE230A:1376650_AT golgi autoantigen, golgin subfamily a, 5 (predicted) rn
RAT230_2:1376650_AT golgi autoantigen, golgin subfamily a, 5 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB03421 Hypothetical protein T24B1.1 [Caenorhabditis elegans] emb|CAB06546.2| Hypothetical protein T24B1.1 [Caenorhabditis elegans] ref|NP_492137.1| T24B1.1 [Caenorhabditis elegans] pir||T25197 hypothetical protein T23G11.8 - Caenorhabditis elegans 0.0
blast P90970 Hypothetical protein T23G11.8 in chromosome I 0.0
blast CAE57365 Hypothetical protein CBG00309 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492137.1 1 524-546
T24B1.1 1 524-546
Sequence
Target Sequence 
>C. ELEGANS:175416_AT
tcttttttgttttgtactttatcataatgcatttatggcttttcttcattgttctcacgt
ataccccagagattcattgatttaatcacggttgtgttccttattatgtatgtttgtata
atatattgggattaacatatactgcatggttagtttttacttggtttagtgtttcttttc
ttttttcgattattttccagtgtgatacccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTTTTGTTTTGTACTTTATCAT 210 615 51 Antisense
ATAATGCATTTATGGCTTTTCTTCA 613 25 74 Antisense
TATGGCTTTTCTTCATTGTTCTCAC 341 655 84 Antisense
CATTGTTCTCACGTATACCCCAGAG 393 215 97 Antisense
CGTATACCCCAGAGATTCATTGATT 510 247 108 Antisense
GATTTAATCACGGTTGTGTTCCTTA 445 427 129 Antisense
ATCACGGTTGTGTTCCTTATTATGT 225 29 135 Antisense
GTGTTCCTTATTATGTATGTTTGTA 304 485 144 Antisense
TTGGGATTAACATATACTGCATGGT 575 681 176 Antisense
ACTGCATGGTTAGTTTTTACTTGGT 272 95 191 Antisense
ATTATTTTCCAGTGTGATACCCGCT 155 13 239 Antisense
Sequence Source Affymetrix Proprietary Database