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[175414_at]

Description AU116489_rc /REP_DB=TREMBL Accession /GB=AU116489 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 89      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 88      6grp_total > 99      4grp_total > 01      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 1447
(-3)
P 		1498.5
(-1.4)
P 		1483.1
(-1.9)
P 		1637.2
(3)
P 		190
B 1653
(-0.5)
P 		1484.8
(-3)
P 		1665.3
(-0.4)
P 		1895.8
(3)
P 		411
C 1531.2
(-1.6)
P 		1489
(-3)
P 		1513.3
(-2.2)
P 		1667.7
(3)
P 		179
avr 1543.7
(-1.7) 		1490.8
(-3) 		1553.9
(-1.4) 		1733.6
(3) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 881
1 2 3 4 5 6 range
A 1337.5
(-0)
P 		1112.4
(-3)
P 		1181.4
(-2.1)
P 		1216.1
(-1.6)
P 		1565.1
(3)
P 		1502.5
(2.2)
P 		453
B 1304.3
(-0.4)
P 		1154.4
(-1.4)
P 		917.2
(-3)
P 		1329.8
(-0.2)
P 		1782.3
(2.9)
P 		1798.5
(3)
P 		881
C 1096.9
(-1.1)
P 		990.3
(-2.4)
P 		1009.7
(-2.2)
P 		939.2
(-3)
P 		1441.6
(3)
P 		1388.5
(2.4)
P 		502
avr 1246.2
(-0.7) 		1085.7
(-2.5) 		1036.1
(-3) 		1161.7
(-1.7) 		1596.3
(3) 		1563.2
(2.6) 		560
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 526.9
(3)
P 		325.3
(-1.2)
P 		387.7
(0.1)
P 		239.6
(-3)
P 		287
B 527.1
(3)
P 		366.7
(-3)
P 		385.9
(-2.3)
P 		404
(-1.6)
P 		160
C 506.9
(2.5)
P 		428.1
(0.6)
P 		527.4
(3)
P 		281.2
(-3)
P 		246
avr 520.3
(3) 		373.4
(-1.2) 		433.7
(0.5) 		308.3
(-3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 535
1 2 3 4 5 6 range
A 246.6
(-3)
P 		395.6
(1)
P 		257.3
(-2.7)
P 		308.4
(-1.4)
P 		472.3
(3)
P 		365.8
(0.2)
P 		226
B 453.8
(-0.2)
P 		384.3
(-1.1)
P 		222.7
(-3)
P 		352.2
(-1.5)
P 		724.1
(3)
P 		670.7
(2.4)
P 		501
C 406.6
(1.7)
P 		302.2
(-0.6)
P 		257
(-1.5)
P 		188.9
(-3)
P 		466.5
(3)
P 		464.8
(3)
P 		278
avr 369
(-0.6) 		360.7
(-0.8) 		245.7
(-3) 		283.2
(-2.3) 		554.3
(3) 		500.4
(2) 		309
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20803
Sequence Type Exemplar sequence
Representative Public ID AU116489 NCBI
Target Description AU116489_rc /REP_DB=TREMBL Accession /GB=AU116489 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062837 NCBI Caenorhabditis elegans C30B5.2a (C30B5.2) mRNA, complete cds. 11/11 A 
C30B5.2a ENSEMBL cdna:known chromosome:CEL140:II:6197148:6198525:1 gene:C30B5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062838 3/11 Cross Hyb Matching Probes None
SNAP00000017616 3/11 Cross Hyb Matching Probes None
GENEFINDER00000017626 3/11 Cross Hyb Matching Probes None
C30B5.2b 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174028 2 1 NM_062837 175414_at (11), 176720_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6197824-6198165(+) 100.0 100.0
Public Domain and Genome References
Ensembl C30B5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN39678 Hypothetical protein C30B5.2a [Caenorhabditis elegans] ref|NP_495238.2| C30B5.2a [Caenorhabditis elegans] sp|Q18319|YTO2_CAEEL Hypothetical protein C30B5.2 in chromosome II 5.0E-61
blast AAN39679 Hypothetical protein C30B5.2b [Caenorhabditis elegans] ref|NP_495239.2| C30B5.2b [Caenorhabditis elegans] 5.0E-58
blast CAE59262 Hypothetical protein CBG02590 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR007262 EMBL-EBI Vacuolar protein sorting 55 1.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495238.2 4 7-26,30-52,65-87,97-119
C30B5.2a 4 7-26,30-52,65-87,97-119
Sequence
Target Sequence 
>C. ELEGANS:175414_AT
tctacttgcatcgtgatgacgacagtggaagctggagccagtctctgttctaaatcattc
acttcactattaatttcttgtcaagtaattgtgatagcgatgtccgcgtgcttcctaatc
ttcatcgccaattcaatcaactttagcgtcatcattttttacttccgcattttcaacggc
gaggatatgaatgggatgtcattgtggtaacaatcgtctggtcatcatctcctaacttat
tctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACTTGCATCGTGATGACGACAG 271 613 13 Antisense
GATGACGACAGTGGAAGCTGGAGCC 416 411 27 Antisense
GAAGCTGGAGCCAGTCTCTGTTCTA 118 343 40 Antisense
AGCCAGTCTCTGTTCTAAATCATTC 147 85 48 Antisense
GTCTCTGTTCTAAATCATTCACTTC 199 471 53 Antisense
TGTTCTAAATCATTCACTTCACTAT 215 563 58 Antisense
CACTTCACTATTAATTTCTTGTCAA 463 197 72 Antisense
AAGTAATTGTGATAGCGATGTCCGC 505 157 95 Antisense
TTGTGGTAACAATCGTCTGGTCATC 617 707 214 Antisense
GTAACAATCGTCTGGTCATCATCTC 635 461 219 Antisense
TCATCATCTCCTAACTTATTCTTTT 226 621 234 Antisense
Sequence Source Affymetrix Proprietary Database