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[175413_s_at]

Description AV184875_rc /REP_DB=TREMBL Accession /GB=AV184875 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 20      6grp_total > 05      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 848
1 2 3 4 range
A 1284.5
(3)
P 		509.2
(-2.5)
P 		574
(-2)
P 		436.7
(-3)
P 		848
B 1238.3
(3)
P 		747.3
(-0.9)
P 		492
(-3)
P 		690.1
(-1.4)
P 		746
C 1165.7
(3)
P 		696.6
(-1.2)
P 		623.2
(-1.8)
P 		492.3
(-3)
P 		673
avr 1229.5
(3) 		651
(-2) 		563.1
(-2.8) 		539.7
(-3) 		690

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 965
1 2 3 4 5 6 range
A 1356.4
(3)
P 		1163.9
(1.3)
P 		755.1
(-2.3)
P 		817.7
(-1.8)
P 		834.1
(-1.6)
P 		681.7
(-3)
P 		675
B 1528.6
(3)
P 		1221.6
(1)
P 		625.9
(-3)
P 		903.7
(-1.2)
P 		810.8
(-1.8)
P 		816.4
(-1.7)
P 		903
C 1352.2
(3)
P 		1276.4
(2.4)
P 		890
(-0.5)
P 		929.8
(-0.2)
P 		764.6
(-1.5)
P 		563.2
(-3)
P 		789
avr 1412.4
(3) 		1220.6
(1.4) 		757
(-2.4) 		883.7
(-1.4) 		803.2
(-2) 		687.1
(-3) 		725
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 467.7
(3)
P 		110.5
(-2.3)
P 		150.1
(-1.7)
P 		63.9
(-3)
P 		404
B 394.9
(3)
P 		184.6
(-1.5)
P 		114
(-3)
P 		147.1
(-2.3)
P 		281
C 385.9
(3)
P 		200.3
(-0.7)
P 		217.2
(-0.3)
P 		83
(-3)
P 		303
avr 416.2
(3) 		165.1
(-1.7) 		160.4
(-1.8) 		98
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 250
(-0.9)
P 		413.9
(3)
P 		164.4
(-3)
P 		207.4
(-2)
P 		251.7
(-0.9)
P 		166
(-3)
P 		250
B 531.9
(3)
P 		406.6
(1)
P 		152
(-3)
P 		239.4
(-1.6)
P 		329.4
(-0.2)
P 		304.4
(-0.6)
P 		380
C 501.2
(3)
P 		389.5
(0.9)
P 		226.5
(-2.2)
P 		187
(-3)
P 		247.4
(-1.8)
P 		188.6
(-3)
P 		314
avr 427.7
(3) 		403.3
(2.4) 		181
(-3) 		211.3
(-2.3) 		276.2
(-0.7) 		219.7
(-2.1) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175413_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22411
Sequence Type Exemplar sequence
Representative Public ID AV184875 NCBI
Target Description AV184875_rc /REP_DB=TREMBL Accession /GB=AV184875 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029819 NCBI Caenorhabditis elegans Sensory AXon guidance family member (sax-3) (sax-3) mRNA, complete cds. 11/11 None
ZK377.2b ENSEMBL cdna:known chromosome:CEL140:X:3451932:3465829:-1 gene:ZK377.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180637 2 1 NM_001029819 175413_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3451989-3452287(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK377.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69080 Sensory axon guidance protein 3, isoform b [Caenorhabditis elegans] ref|NP_001024990.1| Sensory AXon guidance family member (sax-3) [Caenorhabditis elegans] gb|AAC38848.1| SAX-3 [Caenorhabditis elegans] 0.0
blast AAB52657 Sensory axon guidance protein 3, isoform a [Caenorhabditis elegans] ref|NP_741748.2| Sensory AXon guidance family member (sax-3) [Caenorhabditis elegans] 0.0
blast CAE68436 Hypothetical protein CBG14221 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.1E-23
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.6E-7
Pfam IPR003961 EMBL-EBI Fibronectin, type III 2.6E-12
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.6E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.0E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.6E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024990.1 1 874-896
ZK377.2b 1 874-896
Sequence
Target Sequence 
>C. ELEGANS:175413_S_AT
agcagaagtcgctaggctttgagctttacctttttattctctctgtcagacaatcatttt
gtatccgcaattgcaacttgtgatgcgttgtgttcacaactgtttcatgtttaattatgt
aatatttacacttgttttcctttgtgtctcctcgatgttaatatatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGAAGTCGCTAGGCTTTGAGCT 671 75 22 Antisense
GTCGCTAGGCTTTGAGCTTTACCTT 293 473 29 Antisense
GAGCTTTACCTTTTTATTCTCTCTG 590 387 42 Antisense
TTATTCTCTCTGTCAGACAATCATT 278 679 55 Antisense
GACAATCATTTTGTATCCGCAATTG 92 365 70 Antisense
GTATCCGCAATTGCAACTTGTGATG 513 455 82 Antisense
GCAACTTGTGATGCGTTGTGTTCAC 388 319 94 Antisense
TTGTGTTCACAACTGTTTCATGTTT 40 709 109 Antisense
TACACTTGTTTTCCTTTGTGTCTCC 252 643 148 Antisense
CCTTTGTGTCTCCTCGATGTTAATA 220 269 160 Antisense
GTCTCCTCGATGTTAATATATTTCT 490 471 167 Antisense
Sequence Source Affymetrix Proprietary Database