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[175412_at]

Description AU116579_rc /REP_DB=TREMBL Accession /GB=AU116579 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk746d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 63      6grp_total > 63      4grp_total > 01      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 482.1
(-2.5)
P 		447.5
(-3)
P 		469.3
(-2.7)
P 		885.2
(3)
P 		438
B 471.2
(-0.2)
P 		312.6
(-3)
P 		543
(1.1)
P 		650.8
(3)
P 		338
C 432.4
(-1.7)
P 		359.3
(-3)
P 		398.6
(-2.3)
P 		688.9
(3)
P 		330
avr 461.9
(-1.6) 		373.1
(-3) 		470.3
(-1.4) 		741.6
(3) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 361.3
(-3)
P 		460.7
(-1.9)
P 		927.3
(3)
P 		875.3
(2.4)
P 		430.3
(-2.3)
P 		562
(-0.9)
P 		566
B 373.8
(-3)
P 		382.2
(-2.9)
P 		976.6
(3)
P 		770.3
(0.9)
P 		550.3
(-1.2)
P 		641.5
(-0.3)
P 		603
C 339.7
(-3)
P 		411.4
(-2)
P 		792.4
(3)
P 		730.1
(2.2)
P 		436.4
(-1.7)
P 		763.9
(2.6)
P 		453
avr 358.3
(-3) 		418.1
(-2.3) 		898.8
(3) 		791.9
(1.8) 		472.3
(-1.7) 		655.8
(0.3) 		541
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 175.5
(3)
P 		97.1
(-3)
P 		122.7
(-1)
P 		129.6
(-0.5)
P 		78
B 150.3
(3)
P 		77.2
(-3)
P 		125.8
(1)
P 		138.7
(2)
P 		73
C 143.1
(3)
P 		103.3
(-3)
P 		138.9
(2.4)
P 		116.2
(-1.1)
P 		40
avr 156.3
(3) 		92.5
(-3) 		129.1
(0.4) 		128.2
(0.4) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 66.6
(-3)
P 		163.9
(0.8)
P 		201.9
(2.2)
P 		222
(3)
P 		129.9
(-0.6)
P 		136.8
(-0.3)
P 		155
B 130.1
(-2.8)
P 		127.2
(-3)
P 		237.1
(2.9)
P 		204
(1.1)
P 		223.6
(2.2)
P 		239.2
(3)
P 		112
C 125.9
(-3)
P 		125.5
(-3)
P 		201.7
(0.5)
P 		146.8
(-2)
P 		141.2
(-2.3)
P 		255.7
(3)
P 		130
avr 107.5
(-3) 		138.9
(-1.2) 		213.6
(3) 		190.9
(1.7) 		164.9
(0.2) 		210.6
(2.8) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21220
Sequence Type Exemplar sequence
Representative Public ID AU116579 NCBI
Target Description AU116579_rc /REP_DB=TREMBL Accession /GB=AU116579 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk746d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064867 NCBI Caenorhabditis elegans K02F3.6 (K02F3.6) mRNA, complete cds. 11/11 None
SNAP00000008333 ENSEMBL cdna:SNAP chromosome:CEL140:III:828652:830414:-1 11/11 None
GENEFINDER00000008347 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:828652:832209:-1 11/11 None
K02F3.6 ENSEMBL cdna:known chromosome:CEL140:III:828650:832263:-1 gene:K02F3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:828659-829651(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F3.6
Entrez Gene 175239 Entrez gene
SwissProt Q21147 EMBL-EBI
WormBase CE28941 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30876.1.S1_AT similar to abhydrolase domain containing 7 cfa
CHICKEN:GGAAFFX.26704.1.S1_AT similar to abhydrolase domain containing 7 gga
CHICKEN:GGAAFFX.26704.1.S1_S_AT similar to abhydrolase domain containing 7 gga
CHICKEN:GGAAFFX.3730.1.S1_AT similar to abhydrolase domain containing 7 gga
U133_X3P:HS.201555.0.A1_3P_AT abhydrolase domain containing 7 hs
HG-U133_PLUS_2:239579_AT abhydrolase domain containing 7 hs
HG-U133B:239579_AT abhydrolase domain containing 7 hs
HG-U95E:69817_AT abhydrolase domain containing 7 hs
MG-U74CV2:165752_AT abhydrolase domain containing 7 mm
MOE430B:1434526_AT abhydrolase domain containing 7 mm
MOUSE430_2:1434526_AT abhydrolase domain containing 7 mm
RAE230B:1394977_AT abhydrolase domain containing 7 (predicted) rn
RAT230_2:1394977_AT abhydrolase domain containing 7 (predicted) rn
RAE230B:1384869_AT abhydrolase domain containing 7 (predicted) rn
RAT230_2:1384869_AT abhydrolase domain containing 7 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6725 aromatic compound metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK95881 Hypothetical protein K02F3.6 [Caenorhabditis elegans] ref|NP_497268.1| K02F3.6 [Caenorhabditis elegans] 0.0
blast T16527 hypothetical protein K02F3.6 - Caenorhabditis elegans 0.0
blast T16527 hypothetical protein K02F3.6 - Caenorhabditis elegans 1.0E-175
blast AAK95881 Hypothetical protein K02F3.6 [Caenorhabditis elegans] ref|NP_497268.1| K02F3.6 [Caenorhabditis elegans] 1.0E-140
blast AAK95881 Hypothetical protein K02F3.6 [Caenorhabditis elegans] ref|NP_497268.1| K02F3.6 [Caenorhabditis elegans] 1.0E-139
blast CAE69149 Hypothetical protein CBG15179 [Caenorhabditis briggsae] 1.0E-127
blast CAE69149 Hypothetical protein CBG15179 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 6.2E-28
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 2.3E-26
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 2.9E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497268.1 1 74-96
K02F3.6 1 74-96
GENEFINDER00000008347 3 17-36,56-78,183-202
Sequence
Target Sequence 
>C. ELEGANS:175412_AT
gatttagtgttggagatgcccacacttatcatctggggaactgcggacggagcattggac
attgaagcagccgtggatagtttgaacaccctcaaacaaggaacaatgaagaaaatcgaa
ggagcttcacattgggttcaacagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTAGTGTTGGAGATGCCCACAC 261 429 113 Antisense
GTTGGAGATGCCCACACTTATCATC 697 435 121 Antisense
GATGCCCACACTTATCATCTGGGGA 269 415 127 Antisense
TATCATCTGGGGAACTGCGGACGGA 246 657 139 Antisense
GGGAACTGCGGACGGAGCATTGGAC 235 495 148 Antisense
GCGGACGGAGCATTGGACATTGAAG 525 293 155 Antisense
GCATTGGACATTGAAGCAGCCGTGG 362 307 164 Antisense
GGACATTGAAGCAGCCGTGGATAGT 244 525 169 Antisense
GCCGTGGATAGTTTGAACACCCTCA 153 281 182 Antisense
TTGAACACCCTCAAACAAGGAACAA 270 653 194 Antisense
GGAGCTTCACATTGGGTTCAACAGG 173 521 233 Antisense
Sequence Source Affymetrix Proprietary Database