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[175411_at]

Description AV176455_rc /REP_DB=TREMBL Accession /GB=AV176455 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk513e4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 57      4grp_high_8_8 > 47      6grp_total > 58      4grp_total > 41      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 21
(-3)
A 		90.9
(1.5)
P 		113.8
(3)
P 		75.6
(0.5)
A 		93
B 34
(-3)
A 		104.2
(2.9)
P 		104.8
(3)
P 		58.7
(-0.9)
P 		71
C 33.9
(-3)
P 		112.6
(3)
P 		110.3
(2.8)
P 		83.3
(0.8)
P 		79
avr 29.6
(-3) 		102.6
(2.5) 		109.6
(3) 		72.5
(0.2) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 188.9
(3)
P 		64.2
(-1.4)
P 		56.4
(-1.6)
P 		17.7
(-3)
A 		65
(-1.3)
P 		183.2
(2.8)
P 		171
B 165.9
(-0.8)
P 		92.5
(-2)
P 		40.2
(-2.9)
P 		33.4
(-3)
A 		33.8
(-3)
P 		391.9
(3)
P 		359
C 172.2
(-1.1)
P 		43.1
(-2.7)
M 		20.1
(-3)
A 		56.1
(-2.5)
P 		32.8
(-2.8)
P 		490
(3)
P 		470
avr 175.7
(-0.4) 		66.6
(-2.4) 		38.9
(-2.9) 		35.7
(-3) 		43.9
(-2.8) 		355
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 7.6
(-3)
A 		19.7
(0.3)
P 		29.8
(3)
P 		11.1
(-2.1)
A 		22
B 10.8
(-3)
A 		25.7
(3)
P 		24.3
(2.4)
P 		12.5
(-2.3)
P 		15
C 11.2
(-3)
P 		32.4
(1.7)
P 		38.4
(3)
P 		14.1
(-2.4)
P 		27
avr 9.9
(-3) 		25.9
(1.6) 		30.8
(3) 		12.6
(-2.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 34.8
(1.5)
P 		22.8
(-0.3)
P 		12.3
(-1.8)
P 		4.5
(-3)
A 		19.6
(-0.7)
P 		44.6
(3)
P 		40
B 57.7
(-0.9)
P 		30.8
(-2)
P 		9.8
(-3)
P 		8.8
(-3)
A 		13.8
(-2.8)
P 		146.1
(3)
P 		137
C 63.8
(-0.8)
P 		13.1
(-2.7)
M 		5.1
(-3)
A 		11.3
(-2.8)
P 		10.6
(-2.8)
P 		164
(3)
P 		159
avr 52.1
(-0.6) 		22.2
(-2.2) 		9.1
(-3) 		8.2
(-3) 		14.7
(-2.6) 		118.2
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20636
Sequence Type Exemplar sequence
Representative Public ID AV176455 NCBI
Target Description AV176455_rc /REP_DB=TREMBL Accession /GB=AV176455 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk513e4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F07H5.13 ENSEMBL cdna:known chromosome:CEL140:II:8790476:8791350:1 gene:F07H5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8790968-8791281(+) 93.61 100.0
Public Domain and Genome References
Ensembl F07H5.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70082 Hypothetical protein F07H5.13 [Caenorhabditis elegans] ref|NP_495870.1| F07H5.13 [Caenorhabditis elegans] 8.0E-17
Sequence
Target Sequence 
>C. ELEGANS:175411_AT
cacagttttagcttcattccaattcattttatcttccttcatttctgatcccctcgtttt
atgcattctctctcttccttcttccctgtcaaatagaaaatcttaactggatgaattagc
cgatccaaagattgcaaaacaattgatcaatagattagcgatcatcttggctattttgta
aagtctgtaattcagacacgaattagctcatttaaaaatttctcagaggtcaacgaatgg
tcatccagaaaactttaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGTTTTAGCTTCATTCCAATTC 35 197 14 Antisense
TTCCAATTCATTTTATCTTCCTTCA 591 699 30 Antisense
TTTTATCTTCCTTCATTTCTGATCC 547 675 40 Antisense
TCTTCCCTGTCAAATAGAAAATCTT 636 615 93 Antisense
ATCTTAACTGGATGAATTAGCCGAT 43 3 113 Antisense
GAATTAGCCGATCCAAAGATTGCAA 543 323 126 Antisense
AATAGATTAGCGATCATCTTGGCTA 645 171 162 Antisense
ATCTTGGCTATTTTGTAAAGTCTGT 140 31 177 Antisense
TTCAGACACGAATTAGCTCATTTAA 548 687 204 Antisense
TAAAAATTTCTCAGAGGTCAACGAA 86 637 226 Antisense
AATGGTCATCCAGAAAACTTTAATA 10 161 249 Antisense
Sequence Source Affymetrix Proprietary Database