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[175410_at]

Description AV183369_rc /REP_DB=TREMBL Accession /GB=AV183369 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk650e5 : 3prime end, single read.
Cluster 6grp_total > 47      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 46
(-3)
A 		67.6
(-1)
A 		82.5
(0.4)
A 		111.3
(3)
A 		65
B 39.4
(-3)
A 		54.9
(-1.2)
A 		45.5
(-2.3)
A 		91.4
(3)
P 		52
C 49
(-3)
A 		91.4
(0.3)
A 		77.2
(-0.8)
A 		126
(3)
A 		77
avr 44.8
(-3) 		71.3
(-0.5) 		68.4
(-0.8) 		109.6
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 95.6
(1.3)
P 		59.9
(-1.2)
A 		61.4
(-1.1)
A 		74
(-0.2)
A 		34.2
(-3)
A 		120.1
(3)
A 		86
B 107.9
(2.5)
P 		88.5
(1.1)
A 		55.2
(-1.4)
A 		32.7
(-3)
A 		68.9
(-0.4)
A 		114.8
(3)
P 		82
C 62
(-2.9)
P 		66.8
(-1.7)
A 		85
(3)
A 		74.3
(0.2)
A 		61.7
(-3)
A 		67
(-1.6)
P 		23
avr 88.5
(1.4) 		71.7
(-0.8) 		67.2
(-1.4) 		60.3
(-2.3) 		54.9
(-3) 		100.6
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.8
(-1.2)
A 		14.7
(-3)
A 		21.6
(3)
A 		16.3
(-1.6)
A 		7
B 12.6
(-1.6)
A 		13.6
(-0.9)
A 		10.5
(-3)
A 		19.5
(3)
P 		9
C 16.2
(-3)
A 		26.3
(2.7)
A 		26.9
(3)
A 		21.2
(-0.2)
A 		11
avr 15.2
(-3) 		18.2
(1) 		19.7
(3) 		19
(2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 17.6
(-0.7)
P 		21.3
(0.5)
A 		13.4
(-2)
A 		18.8
(-0.3)
A 		10.3
(-3)
A 		29.2
(3)
A 		19
B 37.6
(2.1)
P 		29.4
(0.6)
A 		13.4
(-2.2)
A 		8.7
(-3)
A 		28
(0.4)
A 		42.8
(3)
P 		34
C 23
(3)
P 		20.4
(1.1)
A 		21.6
(2)
A 		14.9
(-3)
A 		20
(0.8)
A 		22.4
(2.6)
P 		8
avr 26.1
(1.1) 		23.7
(0.3) 		16.1
(-2.3) 		14.1
(-3) 		19.4
(-1.2) 		31.5
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22409
Sequence Type Exemplar sequence
Representative Public ID AV183369 NCBI
Target Description AV183369_rc /REP_DB=TREMBL Accession /GB=AV183369 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk650e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075961 NCBI Caenorhabditis elegans F52D2.7 (F52D2.7) mRNA, complete cds. 11/11 None
F52D2.7.1 ENSEMBL cdna:known chromosome:CEL140:X:1962565:1966164:1 gene:F52D2.7 11/11 None
F52D2.7.2 ENSEMBL cdna:known chromosome:CEL140:X:1962567:1966164:1 gene:F52D2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1965812-1966104(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52D2.7
Entrez Gene 180508 Entrez gene
SwissProt Q9TXM6 EMBL-EBI
WormBase CE23758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF02105 Hypothetical protein F52D2.7 [Caenorhabditis elegans] ref|NP_508362.1| F52D2.7 [Caenorhabditis elegans] 0.0
blast C89473 protein F52D2.7 [imported] - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:175410_AT
tacttcccttctgtcaaattgctttatttttggtcttcccttcatctgataacttattct
tggtgtccaaggtttttcctcgcaacttgcctttgatttaactttttcaacttcttttac
tccaatttctctattttttgctttttgaatttttgtgagtctttaaaattgtatggtatg
cctcactttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTCCCTTCTGTCAAATTGCTTT 533 645 81 Antisense
TCCCTTCTGTCAAATTGCTTTATTT 190 599 85 Antisense
GTCTTCCCTTCATCTGATAACTTAT 192 469 113 Antisense
CTGATAACTTATTCTTGGTGTCCAA 330 239 126 Antisense
TCTTGGTGTCCAAGGTTTTTCCTCG 67 619 138 Antisense
TCCAAGGTTTTTCCTCGCAACTTGC 108 587 146 Antisense
CCTCGCAACTTGCCTTTGATTTAAC 280 267 158 Antisense
TGCCTTTGATTTAACTTTTTCAACT 578 583 168 Antisense
TTCAACTTCTTTTACTCCAATTTCT 35 687 186 Antisense
TACTCCAATTTCTCTATTTTTTGCT 667 645 198 Antisense
ATTGTATGGTATGCCTCACTTTCGC 499 3 248 Antisense
Sequence Source Affymetrix Proprietary Database