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[175409_at]

Description AV179932_rc /REP_DB=TREMBL Accession /GB=AV179932 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk600a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 90      6grp_total > 69      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 208.1
(3)
P 		136.3
(-1.8)
P 		117.8
(-3)
P 		148.8
(-0.9)
P 		90
B 208.3
(3)
P 		95.6
(-3)
P 		103.1
(-2.6)
P 		194.6
(2.3)
P 		113
C 221.5
(3)
P 		109.3
(-3)
P 		119.5
(-2.5)
P 		160.3
(-0.3)
P 		112
avr 212.6
(3) 		113.7
(-3) 		113.5
(-3) 		167.9
(0.3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 154.7
(-0.2)
P 		112.9
(-3)
P 		127.1
(-2.1)
P 		114.4
(-2.9)
P 		156.3
(-0.1)
P 		203.4
(3)
P 		91
B 188
(-0.1)
P 		174.2
(-0.6)
P 		155.4
(-1.3)
P 		111.1
(-3)
P 		187.6
(-0.1)
P 		270.5
(3)
P 		159
C 137.2
(-1.9)
P 		155.4
(-0.9)
P 		117.6
(-3)
P 		135.8
(-2)
P 		143.8
(-1.6)
P 		226.1
(3)
P 		109
avr 160
(-0.9) 		147.5
(-1.6) 		133.4
(-2.3) 		120.4
(-3) 		162.6
(-0.8) 		233.3
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 75.8
(3)
P 		29.6
(-2.1)
P 		30.8
(-2)
P 		21.8
(-3)
P 		54
B 66.4
(3)
P 		23.6
(-3)
P 		23.9
(-3)
P 		41.5
(-0.5)
P 		43
C 73.3
(3)
P 		31.4
(-2.4)
P 		41.7
(-1.1)
P 		27
(-3)
P 		46
avr 71.8
(3) 		28.2
(-3) 		32.1
(-2.5) 		30.1
(-2.7) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 28.5
(-2.8)
P 		40.1
(0.4)
P 		27.7
(-3)
P 		29
(-2.6)
P 		47.2
(2.4)
P 		49.5
(3)
P 		22
B 65.4
(0)
P 		58
(-0.6)
P 		37.7
(-2.3)
P 		29.4
(-3)
P 		76.2
(0.9)
P 		100.9
(3)
P 		72
C 50.9
(-0.1)
P 		47.4
(-0.5)
P 		29.9
(-2.7)
P 		27.3
(-3)
P 		46.5
(-0.6)
P 		75.7
(3)
P 		48
avr 48.3
(-0.5) 		48.5
(-0.4) 		31.8
(-2.6) 		28.6
(-3) 		56.6
(0.6) 		75.4
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20481
Sequence Type Exemplar sequence
Representative Public ID AV179932 NCBI
Target Description AV179932_rc /REP_DB=TREMBL Accession /GB=AV179932 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk600a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000010328 ENSEMBL cdna:SNAP chromosome:CEL140:II:11095065:11096388:-1 11/11 None
GENEFINDER00000010338 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11095065:11096388:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11095031-11095311(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54192 Hypothetical protein C09H10.10 [Caenorhabditis elegans] ref|NP_496374.1| C09H10.10 [Caenorhabditis elegans] 7.0E-80
blast CAB54192 Hypothetical protein C09H10.10 [Caenorhabditis elegans] ref|NP_496374.1| C09H10.10 [Caenorhabditis elegans] 4.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 1.3E-12
Sequence
Target Sequence 
>C. ELEGANS:175409_AT
ggatgattcggatctctccgatcgaggaccggccgcgttaaacgagaccatcaaatattg
taatctgatttttcaacaaccaaatagtttcaaaaagaacgagacaacattcgactcaaa
tgttccgaattttaaaagattcgttccaaaaggactcagagatgggagaacatctgccat
ttcgatgcacagcacgacgacatgcaacacaacaatttcgatggtcgactcgagaattgt
gcactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGATTCGGATCTCTCCGATCGA 61 515 16 Antisense
GACCGGCCGCGTTAAACGAGACCAT 119 383 42 Antisense
GAACGAGACAACATTCGACTCAAAT 385 347 112 Antisense
TCGACTCAAATGTTCCGAATTTTAA 440 411 126 Antisense
GATTCGTTCCAAAAGGACTCAGAGA 655 425 153 Antisense
GATGGGAGAACATCTGCCATTTCGA 706 407 176 Antisense
TCTGCCATTTCGATGCACAGCACGA 605 609 188 Antisense
GCACAGCACGACGACATGCAACACA 534 315 202 Antisense
CGACGACATGCAACACAACAATTTC 676 251 210 Antisense
CAACAATTTCGATGGTCGACTCGAG 327 189 225 Antisense
GGTCGACTCGAGAATTGTGCACTGA 37 503 238 Antisense
Sequence Source Affymetrix Proprietary Database