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[175405_s_at]

Description AU116285_rc /REP_DB=TREMBL Accession /GB=AU116285 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742h3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 62      6grp_total > 20      4grp_total > 33      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 602
1 2 3 4 range
A 527.4
(-3)
P 		787.5
(2.9)
P 		791.9
(3)
P 		776.4
(2.6)
P 		265
B 437
(-3)
P 		821.6
(2.2)
P 		839
(2.4)
P 		884.9
(3)
P 		448
C 550.6
(-3)
P 		851.1
(0.7)
P 		1038.5
(3)
P 		902.9
(1.3)
P 		488
avr 505
(-3) 		820.1
(1.9) 		889.8
(3) 		854.7
(2.5) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 441.2
(-2.2)
P 		724.6
(2.7)
P 		744.6
(3)
P 		597.2
(0.5)
P 		483.7
(-1.5)
P 		393.1
(-3)
P 		352
B 568
(2.8)
P 		509.8
(-1.6)
P 		570.9
(3)
P 		557.1
(2)
P 		520.1
(-0.8)
P 		491.7
(-3)
P 		79
C 420.2
(-3)
P 		701.9
(3)
P 		634.9
(1.6)
P 		575.9
(0.3)
P 		435.9
(-2.7)
P 		437.7
(-2.6)
P 		282
avr 476.5
(-2) 		645.4
(2.9) 		650.1
(3) 		576.7
(0.9) 		479.9
(-1.9) 		440.8
(-3) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 192
(2)
P 		170.9
(0.7)
P 		207
(3)
P 		113.6
(-3)
P 		93
B 139.4
(-3)
P 		202.9
(3)
P 		194.4
(2.2)
P 		188.6
(1.6)
P 		64
C 182.3
(-2.1)
P 		244.7
(-0.4)
P 		362
(3)
P 		152.2
(-3)
P 		210
avr 171.2
(-1.9) 		206.2
(0.2) 		254.5
(3) 		151.5
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 81.3
(-3)
P 		257.7
(3)
P 		162.2
(-0.2)
P 		151.5
(-0.6)
P 		146
(-0.8)
P 		95.7
(-2.5)
P 		176
B 197.6
(1.9)
P 		169.7
(-0.4)
P 		138.6
(-3)
P 		147.5
(-2.3)
P 		211.3
(3)
P 		183.4
(0.7)
P 		73
C 155.8
(-0.6)
P 		214.2
(3)
P 		161.6
(-0.2)
P 		115.8
(-3)
P 		141
(-1.5)
P 		146.5
(-1.1)
P 		98
avr 144.9
(-2.5) 		213.9
(3) 		154.1
(-1.7) 		138.3
(-3) 		166.1
(-0.8) 		141.9
(-2.7) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175405_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22399
Sequence Type Exemplar sequence
Representative Public ID AU116285 NCBI
Target Description AU116285_rc /REP_DB=TREMBL Accession /GB=AU116285 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171649 NCBI Caenorhabditis elegans C15C7.7 (C15C7.7) mRNA, complete cds. 11/11 A 
SNAP00000025248 ENSEMBL cdna:SNAP chromosome:CEL140:X:3165844:3167483:1 11/11 None
GENEFINDER00000025255 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3165844:3167483:1 11/11 None
C15C7.7 ENSEMBL cdna:known chromosome:CEL140:X:3165825:3167562:1 gene:C15C7.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027864 1/11 Cross Hyb Matching Probes None
SNAP00000027851 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3167153-3167499(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C7.7
Entrez Gene 180607 Entrez gene
SwissProt Q18014 EMBL-EBI
WormBase CE36786 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16883.1.S1_AT similar to GDP-fucose protein O-fucosyltransferase 1 precursor (Peptide-O-fucosyltransferase) (O-FucT-1) cfa
CANINE_2:CFA.16883.1.S1_S_AT similar to GDP-fucose protein O-fucosyltransferase 1 precursor (Peptide-O-fucosyltransferase) (O-FucT-1) cfa
CANINE_2:CFAAFFX.11672.1.S1_AT similar to GDP-fucose protein O-fucosyltransferase 1 precursor (Peptide-O-fucosyltransferase) (O-FucT-1) cfa
DROSOPHILA_2:1631674_AT O-fucosyltransferase 1 dm
DROSGENOME1:141670_AT O-fucosyltransferase 1 dm
CHICKEN:GGA.5100.1.S1_S_AT protein O-fucosyltransferase 1 gga
CHICKEN:GGAAFFX.12455.1.S1_AT protein O-fucosyltransferase 1 gga
HG-U133_PLUS_2:210433_AT protein O-fucosyltransferase 1 hs
HG-U133A:210433_AT protein O-fucosyltransferase 1 hs
HG-U133A_2:210433_AT protein O-fucosyltransferase 1 hs
HU35KSUBA:D80002_AT protein O-fucosyltransferase 1 hs
HUGENEFL:D80002_AT protein O-fucosyltransferase 1 hs
HU35KSUBA:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HU35KSUBB:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HU35KSUBC:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HU35KSUBD:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HUGENEFL:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HC-G110:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HU35KSUBC:RC_T91958_F_AT protein O-fucosyltransferase 1 hs
HU35KSUBC:RC_AA430163_S_AT protein O-fucosyltransferase 1 hs
HU35KSUBD:RC_AA405654_S_AT protein O-fucosyltransferase 1 hs
U133_X3P:G12653608_3P_AT protein O-fucosyltransferase 1 hs
U133_X3P:HS.178292.0.S1_3P_X_AT protein O-fucosyltransferase 1 hs
U133_X3P:HS.178292.0.S1_3P_AT protein O-fucosyltransferase 1 hs
U133_X3P:212349_3P_AT protein O-fucosyltransferase 1 hs
HG-U133A_2:212349_AT protein O-fucosyltransferase 1 hs
HG-U133_PLUS_2:212349_AT protein O-fucosyltransferase 1 hs
HG-U133A:212349_AT protein O-fucosyltransferase 1 hs
HG-U95AV2:41150_R_AT protein O-fucosyltransferase 1 hs
HG-U95E:67976_AT Protein O-fucosyltransferase 1 hs
MOUSE430_2:1450137_AT protein O-fucosyltransferase 1 mm
MOE430A:1450137_AT protein O-fucosyltransferase 1 mm
MOUSE430A_2:1450137_AT protein O-fucosyltransferase 1 mm
MOE430A:1456323_AT protein O-fucosyltransferase 1 mm
MOUSE430A_2:1456323_AT protein O-fucosyltransferase 1 mm
MOUSE430_2:1456323_AT protein O-fucosyltransferase 1 mm
MG-U74CV2:133811_AT Protein O-fucosyltransferase 1 (Pofut1), mRNA mm
MOE430B:1443881_AT Protein O-fucosyltransferase 1 (Pofut1), mRNA mm
MOUSE430_2:1443881_AT Protein O-fucosyltransferase 1 (Pofut1), mRNA mm
MU19KSUBC:TC41007_AT Protein O-fucosyltransferase 1 (Pofut1), mRNA mm
RAE230B:1380372_AT Protein O-fucosyltransferase 1 rn
RAT230_2:1380372_AT Protein O-fucosyltransferase 1 rn
Protein Similarities
Method ID Description E-Value
blast AAM51514 Hypothetical protein C15C7.7 [Caenorhabditis elegans] ref|NP_741744.2| C15C7.7 [Caenorhabditis elegans] sp|Q18014|OFUT1_CAEEL Putative GDP-fucose protein O-fucosyltransferase 1 precursor (Peptide-O-fucosyltransferase) (O-FucT-1) 0.0
blast CAH40833 protein-O-fucosyltransferase 1 [Caenorhabditis briggsae] 0.0
blast CAE68388 Hypothetical protein CBG14147 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175405_S_AT
cgaagctcatcgtcaagaacctgatgacatgtacacatcacttgccatcatgggaagggc
tgacttgtttgttggaaattgcgtctccacattttcacatattgtaaaacgagaacgaga
tcatgctggacaatctccaagaccttctgcattttttggaatccgggcggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAGCTCATCGTCAAGAACCTGAT 156 253 85 Antisense
CAAGAACCTGATGACATGTACACAT 387 185 98 Antisense
GACATGTACACATCACTTGCCATCA 614 369 110 Antisense
GTACACATCACTTGCCATCATGGGA 384 461 115 Antisense
GCCATCATGGGAAGGGCTGACTTGT 506 281 128 Antisense
AAGGGCTGACTTGTTTGTTGGAAAT 341 1 139 Antisense
TGGAAATTGCGTCTCCACATTTTCA 693 547 157 Antisense
ACGAGAACGAGATCATGCTGGACAA 576 93 193 Antisense
TGGACAATCTCCAAGACCTTCTGCA 46 547 211 Antisense
TCTCCAAGACCTTCTGCATTTTTTG 16 611 218 Antisense
GCATTTTTTGGAATCCGGGCGGTCA 52 307 233 Antisense
Sequence Source Affymetrix Proprietary Database