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[175404_at]

Description AV184305_rc /REP_DB=TREMBL Accession /GB=AV184305 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662f7 : 3prime end, single read.
Cluster 6grp_total > 82      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 125.9
(-3)
P 		144
(0.9)
A 		148.6
(1.8)
A 		154
(3)
P 		28
B 121
(-0.7)
P 		175
(3)
A 		120.9
(-0.7)
A 		86.9
(-3)
A 		88
C 93.3
(-3)
P 		168.8
(3)
A 		124.6
(-0.5)
A 		108.3
(-1.8)
A 		76
avr 113.4
(-3) 		162.6
(3) 		131.4
(-0.8) 		116.4
(-2.6) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 23.3
(-3)
A 		115
(1.8)
M 		103.3
(1.2)
P 		135.8
(2.9)
A 		137.1
(3)
P 		91.1
(0.6)
A 		114
B 149.9
(3)
A 		110.1
(-0.9)
P 		110.4
(-0.9)
A 		114.3
(-0.5)
M 		108.2
(-1.1)
A 		88.5
(-3)
M 		61
C 116
(-0.2)
A 		172.2
(3)
P 		131.6
(0.7)
A 		115.7
(-0.2)
A 		116.1
(-0.2)
A 		66.3
(-3)
A 		106
avr 96.4
(-1.3) 		132.4
(3) 		115.1
(0.9) 		121.9
(1.8) 		120.5
(1.6) 		82
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 45.8
(3)
P 		31.3
(-0.7)
A 		38.9
(1.2)
A 		22.5
(-3)
P 		23
B 38.6
(1.9)
P 		43.2
(3)
A 		28
(-0.7)
A 		18.5
(-3)
A 		25
C 30.9
(-0.5)
P 		48.5
(3)
A 		43.4
(2)
A 		18.3
(-3)
A 		30
avr 38.4
(2.3) 		41
(3) 		36.8
(1.8) 		19.8
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 4.3
(-3)
A 		40.9
(2.9)
M 		22.5
(-0.1)
P 		34.4
(1.9)
A 		41.4
(3)
P 		22.2
(-0.1)
A 		37
B 52.2
(3)
A 		36.6
(-0.7)
P 		26.8
(-3)
A 		30.3
(-2.2)
M 		43.9
(1)
A 		33
(-1.5)
M 		25
C 43
(1.1)
A 		52.5
(3)
P 		33.5
(-0.8)
A 		23.3
(-2.8)
A 		37.6
(0)
A 		22.2
(-3)
A 		30
avr 33.2
(-0.5) 		43.3
(3) 		27.6
(-2.4) 		29.3
(-1.8) 		41
(2.2) 		25.8
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21636
Sequence Type Exemplar sequence
Representative Public ID AV184305 NCBI
Target Description AV184305_rc /REP_DB=TREMBL Accession /GB=AV184305 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067903
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y67D8A.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:3225606:3252571:1 gene:Y67D8A.1 10/11 A B 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067903 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035505 2/11 Cross Hyb Matching Probes None
Y67D8A.1.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3252192-3252514(+) 83.39 100.0
Public Domain and Genome References
Ensembl Y67D8A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68543 Hypothetical protein Y67D8A.1 [Caenorhabditis elegans] ref|NP_500304.2| Y67D8A.1 [Caenorhabditis elegans] 0.0
blast CAE59898 Hypothetical protein CBG03382 [Caenorhabditis briggsae] 0.0
blast AAA31448 phosphorylase kinase beta-subunit 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR008734 EMBL-EBI Phosphorylase kinase alphabeta 1.0E-126
Pfam IPR008734 EMBL-EBI Phosphorylase kinase alphabeta 1.2E-31
Pfam IPR008734 EMBL-EBI Phosphorylase kinase alphabeta 6.3E-37
Sequence
Target Sequence 
>C. ELEGANS:175404_AT
ctgcacaaacagccccgattaattgatgagatggggggattatccggaaaagatcagcgt
ttcggattatgacgtccccaaagtcggtctgctgtatgtgtggcttgtactcgcgcgtgc
gaaattgacaattgttccaacacaatgcaccaccatgacacatcatcatcaccatcaccg
tcaacgccgccataaaaattcgtcaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCACAAACAGCCCCGATTAATTG 232 237 13 Antisense
TGATGAGATGGGGGGATTATCCGGA 403 565 36 Antisense
TATCCGGAAAAGATCAGCGTTTCGG 160 655 53 Antisense
AGCGTTTCGGATTATGACGTCCCCA 535 77 68 Antisense
GATTATGACGTCCCCAAAGTCGGTC 234 429 77 Antisense
CCCCAAAGTCGGTCTGCTGTATGTG 651 259 88 Antisense
TGCTGTATGTGTGGCTTGTACTCGC 558 581 102 Antisense
GCTTGTACTCGCGCGTGCGAAATTG 563 301 115 Antisense
ATTGTTCCAACACAATGCACCACCA 545 3 143 Antisense
CCGTCAACGCCGCCATAAAAATTCG 453 263 190 Antisense
CGCCGCCATAAAAATTCGTCAATCG 117 257 197 Antisense
Sequence Source Affymetrix Proprietary Database