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[175403_s_at]

Description AU113301_rc /REP_DB=TREMBL Accession /GB=AU113301 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk705f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2848
1 2 3 4 range
A 151.7
(-2.9)
P 		135.2
(-3)
P 		126.2
(-3)
P 		2835.7
(3)
P 		2710
B 159.1
(-3)
P 		179.9
(-2.9)
P 		148.8
(-3)
P 		2974
(3)
P 		2825
C 176.4
(-2.9)
P 		130.9
(-3)
P 		134.3
(-3)
P 		2836
(3)
P 		2705
avr 162.4
(-2.9) 		148.7
(-3) 		136.4
(-3) 		2881.9
(3) 		2746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 860
1 2 3 4 5 6 range
A 163.1
(-1.8)
P 		43.6
(-3)
P 		128.7
(-2.1)
P 		59.5
(-2.8)
P 		139.7
(-2)
P 		632.7
(3)
P 		589
B 222
(-1.8)
P 		75.9
(-2.8)
P 		104
(-2.6)
P 		51.1
(-3)
P 		113.5
(-2.6)
P 		887.9
(3)
P 		837
C 173.8
(-2.4)
P 		96.9
(-3)
P 		93.6
(-3)
P 		90.3
(-3)
P 		102.5
(-2.9)
P 		903.9
(3)
P 		814
avr 186.3
(-2) 		72.1
(-3) 		108.8
(-2.7) 		67
(-3) 		118.6
(-2.6) 		808.2
(3) 		741
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 604
1 2 3 4 range
A 55.2
(-2.6)
P 		29.4
(-3)
P 		33
(-2.9)
P 		415.1
(3)
P 		386
B 50.7
(-2.8)
P 		44.4
(-2.9)
P 		34.5
(-3)
P 		633.8
(3)
P 		599
C 58.4
(-2.7)
P 		37.6
(-3)
P 		46.8
(-2.9)
P 		478.2
(3)
P 		441
avr 54.8
(-2.8) 		37.1
(-3) 		38.1
(-3) 		509
(3) 		472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 30.1
(-2.4)
P 		15.5
(-3)
P 		28
(-2.4)
P 		15.1
(-3)
P 		42.2
(-1.8)
P 		154
(3)
P 		139
B 77.3
(-1.8)
P 		25.3
(-2.8)
P 		25.3
(-2.8)
P 		13.5
(-3)
P 		46.1
(-2.4)
P 		331.1
(3)
P 		318
C 64.4
(-2)
P 		29.6
(-2.8)
P 		23.8
(-2.9)
P 		18.2
(-3)
P 		33.2
(-2.7)
P 		302.6
(3)
P 		284
avr 57.3
(-2) 		23.5
(-2.8) 		25.7
(-2.8) 		15.6
(-3) 		40.5
(-2.4) 		262.6
(3) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175403_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20584
Sequence Type Exemplar sequence
Representative Public ID AU113301 NCBI
Target Description AU113301_rc /REP_DB=TREMBL Accession /GB=AU113301 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk705f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182159 NCBI Caenorhabditis elegans K02C4.2 (K02C4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000018327 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8075701:8077457:1 11/11 None
K02C4.2 ENSEMBL cdna:known chromosome:CEL140:II:8075681:8076692:1 gene:K02C4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018320 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8076152-8076679(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02C4.2
Entrez Gene 174298 Entrez gene
SwissProt Q09403 EMBL-EBI
WormBase CE32686 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87785 Hypothetical protein K02C4.2 [Caenorhabditis elegans] ref|NP_871959.1| K02C4.2 [Caenorhabditis elegans] 1.0E-126
blast CAA87785 Hypothetical protein K02C4.2 [Caenorhabditis elegans] ref|NP_871959.1| K02C4.2 [Caenorhabditis elegans] 1.0E-103
blast CAE67762 Hypothetical protein CBG13337 [Caenorhabditis briggsae] 6.0E-82
blast CAE67762 Hypothetical protein CBG13337 [Caenorhabditis briggsae] 5.0E-79
Sequence
Target Sequence 
>C. ELEGANS:175403_S_AT
aaaagccgctcgtcaaggagaatgtgtatttgaatgtctgtatcctggtagaaatgcatg
tactcgaaagttgaaatgtgatctttacttgccacctgaagacgaatttttcaaaacttt
ctatttgtgtgctgaggaacaacgatttttcagcaaatctgagcagatgtatgcttgtat
ttcacatctattcgtgtcaagtgaaacagaagaaccaatccgagcgagagcttcataaca
ttacccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCCGCTCGTCAAGGAGAATGT 147 131 15 Antisense
GTATTTGAATGTCTGTATCCTGGTA 200 453 40 Antisense
TCCTGGTAGAAATGCATGTACTCGA 106 595 57 Antisense
AAATGTGATCTTTACTTGCCACCTG 319 121 88 Antisense
ACTTGCCACCTGAAGACGAATTTTT 54 105 101 Antisense
AAAACTTTCTATTTGTGTGCTGAGG 373 131 127 Antisense
GTGTGCTGAGGAACAACGATTTTTC 268 485 141 Antisense
AAATCTGAGCAGATGTATGCTTGTA 604 117 169 Antisense
TCACATCTATTCGTGTCAAGTGAAA 467 627 196 Antisense
CAGAAGAACCAATCCGAGCGAGAGC 86 205 221 Antisense
AGCGAGAGCTTCATAACATTACCCC 644 81 237 Antisense
Sequence Source Affymetrix Proprietary Database