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[175401_at]

Description AV199956_rc /REP_DB=TREMBL Accession /GB=AV199956 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk554c3 : 3prime end, single read.
Cluster 6grp_total > 19      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 45.8
(3)
A 		9.3
(-2.6)
A 		6.8
(-3)
A 		10.8
(-2.4)
A 		39
B 6.6
(-0.6)
A 		11.1
(3)
A 		6
(-1)
A 		3.5
(-3)
A 		8
C 8.8
(-3)
A 		10.3
(-2.9)
A 		8.8
(-3)
A 		74.6
(3)
A 		66
avr 20.4
(0.5) 		10.2
(-2.2) 		7.2
(-3) 		29.6
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 12.7
(-0.3)
A 		3.8
(-3)
A 		6.1
(-2.3)
A 		23.4
(3)
A 		9.1
(-1.4)
A 		5.8
(-2.4)
A 		20
B 29.9
(3)
A 		6.6
(-3)
A 		19.8
(0.4)
A 		6.5
(-3)
A 		12.3
(-1.5)
A 		7.6
(-2.7)
A 		23
C 9.3
(-1.4)
A 		16.9
(0.4)
A 		4.2
(-2.5)
A 		2.1
(-3)
A 		28.4
(3)
A 		23.5
(1.9)
A 		26
avr 17.3
(3) 		9.1
(-3) 		10
(-2.3) 		10.7
(-1.8) 		16.6
(2.5) 		12.3
(-0.7) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.7
(3)
A 		2
(-2.8)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		15
B 2.1
(1.2)
A 		2.7
(3)
A 		1.4
(-0.9)
A 		0.7
(-3)
A 		2
C 2.9
(-3)
A 		3
(-2.9)
A 		3.1
(-2.9)
A 		12.6
(3)
A 		10
avr 7.2
(3) 		2.6
(-2.4) 		2.1
(-3) 		5
(0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.3
(-1.7)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		5.9
(3)
A 		2.8
(-1)
A 		1.4
(-2.9)
A 		5
B 10.4
(3)
A 		2.2
(-2.7)
A 		4.8
(-0.9)
A 		1.7
(-3)
A 		5
(-0.7)
A 		2.9
(-2.2)
A 		9
C 3.5
(-0.9)
A 		5.2
(0.3)
A 		1.1
(-2.5)
A 		0.4
(-3)
A 		9.2
(3)
A 		7.9
(2.1)
A 		9
avr 5.4
(2.5) 		2.9
(-2.1) 		2.4
(-3) 		2.7
(-2.5) 		5.7
(3) 		4.1
(0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20069
Sequence Type Exemplar sequence
Representative Public ID AV199956 NCBI
Target Description AV199956_rc /REP_DB=TREMBL Accession /GB=AV199956 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk554c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000935 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2505877:2510475:-1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2506317-2506685(-) 98.57 100.0
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000935 2 35-64,84-106
Sequence
Target Sequence 
>C. ELEGANS:175401_AT
agtctatgtttcagcttacgtcgcctgtattagtgcttgtgcatttgtgcgtctagtgtt
tgttgaccattgctattcagccgacaaggattcggaggaacttgttccaaacagatggaa
catcttgaaaccaaaaatgccagaaaatccgccaaccgaccaagcagcgcctgcaccagc
cgatcaagaagcaacacacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCTATGTTTCAGCTTACGTCGCC 204 61 42 Antisense
TCAGCTTACGTCGCCTGTATTAGTG 38 607 52 Antisense
GTCGCCTGTATTAGTGCTTGTGCAT 303 475 61 Antisense
GTGCTTGTGCATTTGTGCGTCTAGT 12 481 74 Antisense
GTGCGTCTAGTGTTTGTTGACCATT 299 479 88 Antisense
GTTGACCATTGCTATTCAGCCGACA 121 439 103 Antisense
TTGCTATTCAGCCGACAAGGATTCG 477 701 111 Antisense
GATTCGGAGGAACTTGTTCCAAACA 452 431 130 Antisense
GGAACATCTTGAAACCAAAAATGCC 107 529 158 Antisense
GCCTGCACCAGCCGATCAAGAAGCA 310 283 210 Antisense
GCCGATCAAGAAGCAACACACAATT 639 283 220 Antisense
Sequence Source Affymetrix Proprietary Database