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[175399_at]

Description AV176659_rc /REP_DB=TREMBL Accession /GB=AV176659 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk516b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 82      6grp_total > 95      4grp_total > 60      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 394.3
(3)
P 		305.9
(-0.2)
P 		364.8
(1.9)
P 		230.6
(-3)
P 		164
B 420.3
(0.8)
P 		531.5
(3)
P 		504.1
(2.5)
P 		228.1
(-3)
P 		303
C 491.3
(2.9)
P 		404.4
(1)
P 		495
(3)
P 		228.1
(-3)
P 		267
avr 435.3
(2.5) 		413.9
(1.9) 		454.6
(3) 		228.9
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 283.2
(-3)
P 		447.3
(2.9)
P 		303.8
(-2.3)
P 		377.3
(0.4)
P 		443.9
(2.7)
P 		450.9
(3)
P 		168
B 260.2
(-1)
P 		355.8
(1.4)
P 		183.4
(-3)
P 		419.6
(3)
P 		406.2
(2.7)
P 		334.8
(0.8)
P 		236
C 438.8
(1.2)
P 		328.6
(-3)
P 		418.2
(0.4)
P 		351.3
(-2.1)
P 		439.9
(1.2)
P 		487.6
(3)
P 		159
avr 327.4
(-1.8) 		377.2
(0.5) 		301.8
(-3) 		382.7
(0.8) 		430
(3) 		424.4
(2.7) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 143.6
(3)
P 		66.4
(-1.2)
P 		95.4
(0.4)
P 		33.8
(-3)
P 		110
B 134
(3)
P 		131.3
(2.8)
P 		116.8
(1.8)
P 		48.6
(-3)
P 		85
C 162.6
(2.6)
P 		116.3
(0.5)
P 		172.5
(3)
P 		38.5
(-3)
P 		134
avr 146.7
(3) 		104.7
(0.6) 		128.2
(2) 		40.3
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 52.2
(-3)
P 		159.1
(3)
P 		66.2
(-2.2)
P 		95.7
(-0.6)
P 		134
(1.6)
P 		109.8
(0.2)
P 		107
B 90.5
(-0.7)
P 		118.4
(0.7)
P 		44.5
(-3)
P 		111.1
(0.3)
P 		165
(3)
P 		124.9
(1)
P 		121
C 162.6
(3)
P 		100.3
(-1.1)
P 		106.4
(-0.7)
P 		70.6
(-3)
P 		142.3
(1.6)
P 		163.2
(3)
P 		93
avr 101.8
(-0.6) 		125.9
(1.3) 		72.4
(-3) 		92.5
(-1.4) 		147.1
(3) 		132.6
(1.8) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21188
Sequence Type Exemplar sequence
Representative Public ID AV176659 NCBI
Target Description AV176659_rc /REP_DB=TREMBL Accession /GB=AV176659 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk516b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK353.7 ENSEMBL cdna:known chromosome:CEL140:III:8402018:8403522:-1 gene:ZK353.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044102 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8402023-8402323(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK353.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28197 Hypothetical protein ZK353.7 [Caenorhabditis elegans] ref|NP_498855.1| ZK353.7 [Caenorhabditis elegans] sp|P34630|CUTC_CAEEL Copper homeostasis protein cutC homolog 1.0E-141
blast CAE71264 Hypothetical protein CBG18146 [Caenorhabditis briggsae] 1.0E-121
blast NP_001011220 hypothetical protein LOC496655 [Xenopus tropicalis] gb|AAH87780.1| Hypothetical LOC496655 [Xenopus tropicalis] 3.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR005627 EMBL-EBI CutC family 2.9E-63
Sequence
Target Sequence 
>C. ELEGANS:175399_AT
gatattcgaagtagcatgtttttttactctacgggattgtgagggttatcaatttattta
tgcctaggcaactttaatataggagttgatttgaacttaattaaaattttaaatttcgct
cctcattatttcacaacctctcaaattttagaccacgaatgtatgcaaacacgcgccctg
aagatttgttccttctctcaatttctcatttttttgctctacattttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTCGAAGTAGCATGTTTTTTT 640 425 54 Antisense
GCATGTTTTTTTACTCTACGGGATT 51 307 67 Antisense
TCTACGGGATTGTGAGGGTTATCAA 176 611 81 Antisense
TATCAATTTATTTATGCCTAGGCAA 687 659 100 Antisense
TAAATTTCGCTCCTCATTATTTCAC 551 641 163 Antisense
CCTCATTATTTCACAACCTCTCAAA 54 267 174 Antisense
CAACCTCTCAAATTTTAGACCACGA 514 185 187 Antisense
ACGAATGTATGCAAACACGCGCCCT 244 91 208 Antisense
AACACGCGCCCTGAAGATTTGTTCC 5 135 221 Antisense
TGAAGATTTGTTCCTTCTCTCAATT 508 575 232 Antisense
TCTCATTTTTTTGCTCTACATTTTC 352 613 257 Antisense
Sequence Source Affymetrix Proprietary Database