[Home] | [Total List]

[175398_s_at] Alcohol/other dehydrogenases, short chain type

Description AV181368_rc /REP_DB=TREMBL Accession /GB=AV181368 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk619e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 52      6grp_total > 51      4grp_total > 60      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 410.4
(3)
P 		382.7
(2.4)
P 		395.4
(2.7)
P 		116.9
(-3)
P 		294
B 427.4
(2.3)
P 		401.3
(2)
P 		472.3
(3)
P 		63.1
(-3)
P 		409
C 394.5
(1.8)
P 		412.4
(2.2)
P 		454.7
(3)
P 		142.2
(-3)
P 		313
avr 410.8
(2.5) 		398.8
(2.2) 		440.8
(3) 		107.4
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 799
1 2 3 4 5 6 range
A 566.5
(-0.2)
P 		741.4
(1.1)
P 		993.6
(3)
P 		914
(2.4)
P 		450
(-1.1)
P 		194.8
(-3)
P 		799
B 531.1
(-0.2)
P 		642.5
(0.7)
P 		909.5
(3)
P 		854.8
(2.5)
P 		596.4
(0.3)
P 		204.7
(-3)
P 		705
C 601.7
(0)
P 		663.1
(0.5)
P 		949.8
(2.7)
P 		987.7
(3)
P 		450.6
(-1.1)
P 		209.8
(-3)
P 		778
avr 566.4
(-0.1) 		682.3
(0.8) 		951
(3) 		918.8
(2.7) 		499
(-0.6) 		203.1
(-3) 		748
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 149.4
(3)
P 		83.1
(-0)
P 		103.4
(0.9)
P 		17.1
(-3)
P 		132
B 136.3
(3)
P 		99.1
(1.2)
P 		109.4
(1.7)
P 		13.4
(-3)
P 		123
C 130.6
(1.8)
P 		118.6
(1.2)
P 		158.5
(3)
P 		24
(-3)
P 		135
avr 138.8
(3) 		100.3
(1.1) 		123.8
(2.3) 		18.2
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 104.4
(-1.4)
P 		263.7
(3)
P 		216.4
(1.7)
P 		231.8
(2.1)
P 		135.8
(-0.5)
P 		47.4
(-3)
P 		216
B 184.8
(0.9)
P 		213.9
(2)
P 		220.9
(2.2)
P 		226.4
(2.4)
P 		242.3
(3)
P 		76.3
(-3)
P 		166
C 223
(2.3)
P 		202.3
(1.6)
P 		241.7
(3)
P 		198.6
(1.5)
P 		145.8
(-0.4)
P 		70.2
(-3)
P 		172
avr 170.7
(0.9) 		226.6
(3) 		226.3
(3) 		218.9
(2.7) 		174.6
(1.1) 		64.6
(-3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175398_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20155
Sequence Type Exemplar sequence
Representative Public ID AV181368 NCBI
Target Description AV181368_rc /REP_DB=TREMBL Accession /GB=AV181368 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk619e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060162 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-4) (dhs-4) mRNA, complete cds. 11/11 None
GENEFINDER00000020956 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9655808:9657307:-1 11/11 None
T05F1.10 ENSEMBL cdna:known chromosome:CEL140:I:9655732:9657320:-1 gene:T05F1.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020948 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9655736-9656348(-) 100.0 100.0
Public Domain and Genome References
Gene Title Alcohol/other dehydrogenases, short chain type
Gene Symbol dhs-4
Ensembl T05F1.10
Entrez Gene 172810 Entrez gene
SwissProt O18030 EMBL-EBI
WormBase CE26900 Wormbase
Functional Annotations
Ortholog
ID Title Organism
U133_X3P:HS.104920.0.A1_3P_AT similar to retinal short chain dehydrogenase reductase; short chain dehydrogenase reductase 9 hs
HG-U95C:61491_AT similar to retinal short chain dehydrogenase reductase; short chain dehydrogenase reductase 9 hs
HU35KSUBB:RC_H05255_AT Similar to retinal short chain dehydrogenase reductase; short chain dehydrogenase reductase 9 hs
MOE430B:1457025_AT RIKEN cDNA 4833413O15 gene mm
MOUSE430_2:1457025_AT RIKEN cDNA 4833413O15 gene mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04694 Hypothetical protein T05F1.10 [Caenorhabditis elegans] ref|NP_492563.1| DeHydrogenases, Short chain family member (dhs-4) [Caenorhabditis elegans] 1.0E-160
blast CAB04694 Hypothetical protein T05F1.10 [Caenorhabditis elegans] ref|NP_492563.1| DeHydrogenases, Short chain family member (dhs-4) [Caenorhabditis elegans] 1.0E-155
blast CAE60205 Hypothetical protein CBG03768 [Caenorhabditis briggsae] 1.0E-126
blast CAE60205 Hypothetical protein CBG03768 [Caenorhabditis briggsae] 1.0E-121
blast CAA98524 Hypothetical protein T11F9.11 [Caenorhabditis elegans] ref|NP_505915.1| DeHydrogenases, Short chain family member (dhs-19) [Caenorhabditis elegans] 2.0E-65
blast CAA98524 Hypothetical protein T11F9.11 [Caenorhabditis elegans] ref|NP_505915.1| DeHydrogenases, Short chain family member (dhs-19) [Caenorhabditis elegans] 6.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.2E-47
Sequence
Target Sequence 
>C. ELEGANS:175398_S_AT
caacacttgtttgtccgtattacgttcatacttcgatgtttgacgccactggagcagcta
ccagattcccttggattttcccaattctggacactgattacgttgttcagaaaatctttg
aagcaattgaaacggaacaagagtttctcgtaactccaagagctttctatttggtatttg
ctggaattcagattcttccatacaaagctcaggcaatggtcgcacaattctttgggcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACACTTGTTTGTCCGTATTACGT 114 189 21 Antisense
GTCCGTATTACGTTCATACTTCGAT 252 473 33 Antisense
CATACTTCGATGTTTGACGCCACTG 192 213 47 Antisense
TGACGCCACTGGAGCAGCTACCAGA 666 569 61 Antisense
GATTCCCTTGGATTTTCCCAATTCT 380 431 84 Antisense
GGATTTTCCCAATTCTGGACACTGA 459 507 93 Antisense
TTCTGGACACTGATTACGTTGTTCA 253 691 105 Antisense
GTTTCTCGTAACTCCAAGAGCTTTC 239 449 163 Antisense
AGATTCTTCCATACAAAGCTCAGGC 25 67 210 Antisense
AAGCTCAGGCAATGGTCGCACAATT 211 149 225 Antisense
ATGGTCGCACAATTCTTTGGGCTTG 190 51 236 Antisense
Sequence Source Affymetrix Proprietary Database