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[175396_s_at]

Description AU116611_rc /REP_DB=TREMBL Accession /GB=AU116611 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk746g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 90      6grp_total > 69      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 141.9
(-3)
P 		183
(3)
P 		156.1
(-0.9)
P 		154.5
(-1.2)
P 		41
B 140.4
(0.9)
P 		124.9
(-1.1)
P 		109.4
(-3)
P 		157.6
(3)
P 		48
C 148.3
(3)
P 		83
(-3)
P 		124.7
(0.8)
P 		128.1
(1.1)
P 		65
avr 143.5
(1.8) 		130.3
(-2.9) 		130.1
(-3) 		146.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 79
(-3)
P 		149.6
(3)
P 		142
(2.4)
P 		146.7
(2.8)
P 		124.1
(0.8)
P 		121
(0.6)
P 		71
B 156.3
(-0.3)
P 		125.1
(-2.5)
P 		165.6
(0.4)
P 		118.8
(-3)
P 		126.7
(-2.4)
P 		202.2
(3)
P 		83
C 173.7
(1.4)
P 		125.7
(-0.5)
P 		64.7
(-3)
P 		97.8
(-1.7)
P 		189.8
(2.1)
P 		212.5
(3)
P 		148
avr 136.3
(-1.4) 		133.5
(-1.7) 		124.1
(-2.7) 		121.1
(-3) 		146.9
(-0.3) 		178.6
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 51.7
(3)
P 		39.7
(0.5)
P 		40.8
(0.8)
P 		22.6
(-3)
P 		29
B 44.8
(3)
P 		30.9
(-1.3)
P 		25.3
(-3)
P 		33.6
(-0.4)
P 		20
C 49.1
(3)
P 		23.9
(-2.5)
P 		43.5
(1.8)
P 		21.6
(-3)
P 		28
avr 48.5
(3) 		31.5
(-1.5) 		36.5
(-0.2) 		25.9
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 14.6
(-3)
P 		53.2
(3)
P 		30.9
(-0.5)
P 		37.2
(0.5)
P 		37.5
(0.6)
P 		29.5
(-0.7)
P 		39
B 54.4
(0.1)
P 		41.6
(-1.6)
P 		40.2
(-1.8)
P 		31.5
(-3)
P 		51.5
(-0.3)
P 		75.4
(3)
P 		44
C 64.4
(2.3)
P 		38.4
(-0.6)
P 		16.5
(-3)
P 		19.7
(-2.6)
P 		61.4
(1.9)
P 		71.1
(3)
P 		55
avr 44.5
(0.1) 		44.4
(0.1) 		29.2
(-3) 		29.5
(-2.9) 		50.1
(1.3) 		58.7
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175396_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20085
Sequence Type Exemplar sequence
Representative Public ID AU116611 NCBI
Target Description AU116611_rc /REP_DB=TREMBL Accession /GB=AU116611 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk746g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058732(11), NM_058731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058732 NCBI Caenorhabditis elegans Y44E3B.1b (Y44E3B.1) mRNA, complete cds. 11/11 A 
NM_058731 NCBI Caenorhabditis elegans Y44E3B.1a (Y44E3B.1) mRNA, complete cds. 11/11 A 
Y44E3B.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:3264287:3265858:-1 gene:Y44E3B.1 11/11 A 
Y44E3B.1a ENSEMBL cdna:known chromosome:CEL140:I:3264287:3265855:-1 gene:Y44E3B.1 11/11 A 
Y44E3B.1b.1 ENSEMBL cdna:known chromosome:CEL140:I:3264287:3266763:-1 gene:Y44E3B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3264340-3264719(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y44E3B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21516 Hypothetical protein Y44E3B.1a [Caenorhabditis elegans] ref|NP_491132.1| Y44E3B.1a [Caenorhabditis elegans] 1.0E-156
blast AAK21516 Hypothetical protein Y44E3B.1a [Caenorhabditis elegans] ref|NP_491132.1| Y44E3B.1a [Caenorhabditis elegans] 1.0E-143
blast AAK68487 Hypothetical protein Y44E3B.1b [Caenorhabditis elegans] ref|NP_491133.1| Y44E3B.1b [Caenorhabditis elegans] 1.0E-143
Sequence
Target Sequence 
>C. ELEGANS:175396_S_AT
aaacgggctcgaaacaatgatgccgtccggaaaagtcgaaataaagcgaaagagctgcaa
ctgcagaaggacgaggagtatgatgagatgaagaaaaggattacacaacttgaagcagaa
ctacaatccgagcgggaaggccgggaacgtgaccaacaacttatcaagcaactaattcgc
gaaaagtgagggaatcgacatcgaaaggaccaaggaaaagctctcgaaatgcactggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGGGCTCGAAACAATGATGCCG 704 121 17 Antisense
GATGCCGTCCGGAAAAGTCGAAATA 404 415 35 Antisense
AAAGCGAAAGAGCTGCAACTGCAGA 415 123 59 Antisense
GCTGCAACTGCAGAAGGACGAGGAG 430 295 70 Antisense
GGATTACACAACTTGAAGCAGAACT 454 509 114 Antisense
GAAGCAGAACTACAATCCGAGCGGG 456 341 128 Antisense
TCCGAGCGGGAAGGCCGGGAACGTG 379 587 143 Antisense
GGGAACGTGACCAACAACTTATCAA 499 493 159 Antisense
ACTTATCAAGCAACTAATTCGCGAA 424 103 175 Antisense
AATCGACATCGAAAGGACCAAGGAA 173 167 209 Antisense
GAAAAGCTCTCGAAATGCACTGGAA 454 353 231 Antisense
Sequence Source Affymetrix Proprietary Database