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[175394_at]

Description AV181347_rc /REP_DB=TREMBL Accession /GB=AV181347 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk619b7 : 3prime end, single read.
Cluster 6grp_total > 66      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 2.5
(-3)
A 		2.8
(-3)
A 		5.8
(-2.8)
A 		94.9
(3)
A 		92
B 45.1
(3)
A 		4.5
(-3)
A 		4.5
(-3)
A 		27.1
(0.3)
A 		41
C 3.7
(-2.9)
A 		5.3
(-2.7)
A 		2.4
(-3)
A 		56
(3)
A 		54
avr 17.1
(-1.6) 		4.2
(-3) 		4.2
(-3) 		59.3
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 4.5
(-2.3)
A 		2.4
(-3)
A 		22.3
(3)
A 		2.3
(-3)
A 		3.8
(-2.6)
A 		4.6
(-2.3)
A 		20
B 5.1
(-1.8)
A 		3.4
(-2.4)
A 		2.1
(-2.9)
A 		3.4
(-2.4)
A 		1.9
(-3)
A 		17.9
(3)
A 		16
C 7
(-2)
A 		7.5
(-1.9)
A 		2.9
(-2.8)
A 		6.2
(-2.2)
A 		2.1
(-3)
A 		31.1
(3)
A 		29
avr 5.5
(-1.9) 		4.4
(-2.3) 		9.1
(-0.5) 		4
(-2.5) 		2.6
(-3) 		17.9
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.9
(-2.9)
A 		0.6
(-3)
A 		1.5
(-2.6)
A 		13.9
(3)
A 		13
B 14.4
(3)
A 		1.1
(-3)
A 		1
(-3)
A 		5.8
(-0.9)
A 		13
C 1.2
(-2.7)
A 		1.5
(-2.5)
A 		0.8
(-3)
A 		9.4
(3)
A 		9
avr 5.5
(0.1) 		1.1
(-3) 		1.1
(-3) 		9.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		0.9
(-2.6)
A 		4.9
(3)
A 		0.6
(-3)
A 		1.2
(-2.2)
A 		1.1
(-2.3)
A 		4
B 1.8
(-1.7)
A 		1.1
(-2.4)
A 		0.5
(-3)
A 		0.9
(-2.6)
A 		0.8
(-2.7)
A 		6.7
(3)
A 		6
C 2.6
(-1.8)
A 		2.3
(-2)
A 		0.7
(-3)
A 		1.2
(-2.7)
A 		0.7
(-3)
A 		10.4
(3)
A 		10
avr 1.7
(-2.1) 		1.4
(-2.4) 		2
(-1.7) 		0.9
(-3) 		0.9
(-3) 		6.1
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20183
Sequence Type Exemplar sequence
Representative Public ID AV181347 NCBI
Target Description AV181347_rc /REP_DB=TREMBL Accession /GB=AV181347 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk619b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F39B2.10.4 ENSEMBL cdna:known chromosome:CEL140:I:14764976:14767472:1 gene:F39B2.10 11/11 None
F39B2.10.3 ENSEMBL cdna:known chromosome:CEL140:I:14765179:14767472:1 gene:F39B2.10 11/11 None
F39B2.10.2 ENSEMBL cdna:known chromosome:CEL140:I:14765181:14767472:1 gene:F39B2.10 11/11 None
F39B2.10.1 ENSEMBL cdna:known chromosome:CEL140:I:14765182:14767472:1 gene:F39B2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14767113-14767393(+) 100.0 100.0
Public Domain and Genome References
Ensembl F39B2.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07390 Hypothetical protein F39B2.10 [Caenorhabditis elegans] ref|NP_493570.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-12) [Caenorhabditis elegans] 0.0
blast CAE72578 Hypothetical protein CBG19766 [Caenorhabditis briggsae] 1.0E-175
blast AAM81355 heat shock protein 40 [Steinernema feltiae] 2.0E-97
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.00000003137439E-22
Pfam IPR002939 EMBL-EBI Chaperone DnaJ, C-terminal 3.1E-10
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 3.5E-37
Pfam IPR001305 EMBL-EBI DnaJ central domain (CXXCXGXG) 1.8E-29
Sequence
Target Sequence 
>C. ELEGANS:175394_AT
cgcccgaaactgatgcttccaaatgagaagccttgaaaaatagattttagattttaaata
atttttttcgagacttcctaacctgagaaaatattgtaatcgtcgacaaggcgaaatgtc
ccatcaaacattgaaagtatttagtacaggtgtccgttttcgtgaacatttcttaaagaa
gcttgcgaaaatcgatgagttactccactagcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCGAAACTGATGCTTCCAAATG 529 251 27 Antisense
TTTTTTCGAGACTTCCTAACCTGAG 518 673 89 Antisense
GAGACTTCCTAACCTGAGAAAATAT 296 393 96 Antisense
ATATTGTAATCGTCGACAAGGCGAA 705 17 117 Antisense
ACAAGGCGAAATGTCCCATCAAACA 442 113 132 Antisense
ATGTCCCATCAAACATTGAAAGTAT 675 47 142 Antisense
GAAAGTATTTAGTACAGGTGTCCGT 154 361 159 Antisense
GTACAGGTGTCCGTTTTCGTGAACA 243 461 170 Antisense
GTGTCCGTTTTCGTGAACATTTCTT 407 487 176 Antisense
GAACATTTCTTAAAGAAGCTTGCGA 382 351 190 Antisense
TCGATGAGTTACTCCACTAGCCCAC 612 601 218 Antisense
Sequence Source Affymetrix Proprietary Database