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[175393_at]

Description AV176170_rc /REP_DB=TREMBL Accession /GB=AV176170 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508h8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      6grp_highest_nonorm > 16      6grp_total > 20      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25080
1 2 3 4 range
A 17.9
(-3)
A 		25090.2
(3)
P 		24724.4
(2.9)
P 		45.1
(-3)
A 		25072
B 18.2
(-3)
A 		20254.1
(2.1)
P 		23690.1
(3)
P 		20.2
(-3)
A 		23672
C 10
(-3)
A 		20182.8
(3)
P 		19810.7
(2.9)
P 		65.7
(-3)
A 		20173
avr 15.4
(-3) 		21842.4
(2.8) 		22741.7
(3) 		43.7
(-3) 		22726

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11958
1 2 3 4 5 6 range
A 1823.3
(-3)
P 		13765.3
(3)
P 		8487.6
(0.3)
P 		6442.3
(-0.7)
P 		3611.6
(-2.1)
P 		4696.4
(-1.6)
P 		11942
B 2452.9
(-3)
P 		13781.4
(3)
P 		9077.8
(0.5)
P 		6483.4
(-0.9)
P 		3777
(-2.3)
P 		3763.6
(-2.3)
P 		11329
C 2390.7
(-3)
P 		13697.1
(3)
P 		10265.1
(1.2)
P 		6338.4
(-0.9)
P 		5420.8
(-1.4)
P 		2954.4
(-2.7)
P 		11306
avr 2222.3
(-3) 		13747.9
(3) 		9276.8
(0.7) 		6421.4
(-0.8) 		4269.8
(-1.9) 		3804.8
(-2.2) 		11526
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6901
1 2 3 4 range
A 6.5
(-3)
A 		5446.4
(2.1)
P 		6463.4
(3)
P 		6.6
(-3)
A 		6457
B 5.8
(-3)
A 		5002.3
(2.5)
P 		5489.5
(3)
P 		4.3
(-3)
A 		5485
C 3.3
(-3)
A 		5802.7
(2)
P 		6904.6
(3)
P 		11.1
(-3)
A 		6901
avr 5.2
(-3) 		5417.1
(2.2) 		6285.8
(3) 		7.3
(-3) 		6281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4560
1 2 3 4 5 6 range
A 336.1
(-3)
P 		4895.6
(3)
P 		1848.4
(-1)
P 		1633.9
(-1.3)
P 		1089.8
(-2)
P 		1143.4
(-1.9)
P 		4560
B 853.5
(-3)
P 		4587.3
(3)
P 		2204.4
(-0.8)
P 		1717.2
(-1.6)
P 		1534.6
(-1.9)
P 		1403.4
(-2.1)
P 		3734
C 886.1
(-3)
P 		4179.4
(3)
P 		2612.6
(0.1)
P 		1274.7
(-2.3)
P 		1754.1
(-1.4)
P 		989
(-2.8)
P 		3293
avr 691.9
(-3) 		4554.1
(3) 		2221.8
(-0.6) 		1541.9
(-1.7) 		1459.5
(-1.8) 		1178.6
(-2.2) 		3862
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21951
Sequence Type Exemplar sequence
Representative Public ID AV176170 NCBI
Target Description AV176170_rc /REP_DB=TREMBL Accession /GB=AV176170 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071825 NCBI Caenorhabditis elegans Y47D7A.13 (Y47D7A.13) mRNA, complete cds. 11/11 None
Y47D7A.13.2 ENSEMBL cdna:known chromosome:CEL140:V:4434471:4435741:-1 gene:Y47D7A.13 11/11 None
Y47D7A.13.1 ENSEMBL cdna:known chromosome:CEL140:V:4434659:4435741:-1 gene:Y47D7A.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043270 7/11 Cross Hyb Matching Probes None
GENEFINDER00000043279 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4434737-4435058(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.13
Entrez Gene 178841 Entrez gene
SwissProt Q9N3U2 EMBL-EBI
WormBase CE22060 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32247 Hypothetical protein Y47D7A.13 [Caenorhabditis elegans] ref|NP_504226.2| Y47D7A.13 [Caenorhabditis elegans] 8.0E-12
Sequence
Target Sequence 
>C. ELEGANS:175393_AT
ccagctgttgccgagcaagtcgttgagacttccgcttccggataccgccagagattccac
ctcaagaaggccgccaaggcatagattcgatgatatatttctctaactgttttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCTGTTGCCGAGCAAGTCGTTG 493 273 182 Antisense
TGTTGCCGAGCAAGTCGTTGAGACT 374 563 187 Antisense
GCAAGTCGTTGAGACTTCCGCTTCC 251 321 196 Antisense
CTTCCGGATACCGCCAGAGATTCCA 125 217 216 Antisense
TTCCGGATACCGCCAGAGATTCCAC 33 699 217 Antisense
CGCCAGAGATTCCACCTCAAGAAGG 168 257 227 Antisense
AGAGATTCCACCTCAAGAAGGCCGC 636 67 231 Antisense
GAAGGCCGCCAAGGCATAGATTCGA 143 333 247 Antisense
GGCCGCCAAGGCATAGATTCGATGA 138 541 250 Antisense
GATTCGATGATATATTTCTCTAACT 600 431 265 Antisense
GATATATTTCTCTAACTGTTTTTTT 157 427 273 Antisense
Sequence Source Affymetrix Proprietary Database