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[175392_at]

Description AV182275_rc /REP_DB=TREMBL Accession /GB=AV182275 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk635e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 14      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 468.9
(1.8)
P 		265.9
(-2.6)
P 		249.7
(-3)
P 		522.6
(3)
P 		273
B 403.9
(0)
P 		314.9
(-1.7)
P 		247.7
(-3)
P 		558.6
(3)
P 		311
C 401.8
(2.5)
P 		245.8
(-3)
P 		260.1
(-2.5)
P 		416.1
(3)
P 		170
avr 424.9
(1.2) 		275.5
(-2.4) 		252.5
(-3) 		499.1
(3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 586
1 2 3 4 5 6 range
A 477.8
(-1.7)
P 		410.1
(-3)
P 		442.5
(-2.4)
P 		414
(-2.9)
P 		615.5
(1)
P 		718.3
(3)
P 		308
B 482.5
(-1.6)
P 		453.6
(-1.9)
P 		343.3
(-3)
P 		528.5
(-1.1)
P 		415.1
(-2.3)
P 		929.1
(3)
P 		586
C 431.2
(-2.4)
P 		449
(-2.1)
P 		381.8
(-3)
P 		469.1
(-1.9)
P 		532.8
(-1.1)
P 		854
(3)
P 		472
avr 463.8
(-2) 		437.6
(-2.3) 		389.2
(-3) 		470.5
(-1.9) 		521.1
(-1.2) 		833.8
(3) 		445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 170.7
(3)
P 		57.7
(-3)
P 		65.3
(-2.6)
P 		76.5
(-2)
P 		113
B 128.8
(3)
P 		77.8
(-1.3)
P 		57.4
(-3)
P 		119
(2.2)
P 		71
C 133
(3)
P 		70.7
(-3)
P 		90.7
(-1)
P 		70.2
(-3)
P 		63
avr 144.2
(3) 		68.7
(-3) 		71.1
(-2.8) 		88.6
(-1.4) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 88.1
(-3)
P 		145.9
(0.6)
P 		96.4
(-2.5)
P 		105
(-2)
P 		185.7
(3)
P 		174.9
(2.3)
P 		98
B 167.9
(-1.1)
P 		151
(-1.5)
P 		83.4
(-3)
P 		140
(-1.7)
P 		168.7
(-1.1)
P 		346.4
(3)
P 		263
C 159.8
(-0.9)
P 		137
(-1.7)
P 		97.2
(-2.9)
P 		94.3
(-3)
P 		172.4
(-0.6)
P 		285.9
(3)
P 		192
avr 138.6
(-1.4) 		144.6
(-1.2) 		92.3
(-3) 		113.1
(-2.3) 		175.6
(-0.2) 		269.1
(3) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20809
Sequence Type Exemplar sequence
Representative Public ID AV182275 NCBI
Target Description AV182275_rc /REP_DB=TREMBL Accession /GB=AV182275 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk635e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062601 NCBI Caenorhabditis elegans F09E5.7 (F09E5.7) mRNA, complete cds. 11/11 None
F09E5.7.1 ENSEMBL cdna:known chromosome:CEL140:II:5352055:5353646:1 gene:F09E5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044035 8/11 Cross Hyb Matching Probes None
F46B3.13 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5353320-5353607(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09E5.7
Entrez Gene 173907 Entrez gene
SwissProt Q19257 EMBL-EBI
WormBase CE02614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA79347 Hypothetical protein F09E5.7 [Caenorhabditis elegans] ref|NP_495002.1| F09E5.7 [Caenorhabditis elegans] 1.0E-149
blast CAE59082 Hypothetical protein CBG02374 [Caenorhabditis briggsae] 3.0E-97
Sequence
Target Sequence 
>C. ELEGANS:175392_AT
gagcatgctacaagaaaccaaacacacaaaagccttataaattccagaaactctcacgtc
tacatgactataaaagcctgtctcagaaaagcctgtctcagaaattttgttcggaaaacg
tcccggtcaactttttgttgacaatgttttaccctcttccccccctcatacttagtcacc
ggactcttgcgggtccaaatgattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATGCTACAAGAAACCAAACAC 514 387 64 Antisense
CACAAAAGCCTTATAAATTCCAGAA 368 195 88 Antisense
AATTCCAGAAACTCTCACGTCTACA 158 177 103 Antisense
GAAACTCTCACGTCTACATGACTAT 519 357 110 Antisense
ACATGACTATAAAAGCCTGTCTCAG 127 107 125 Antisense
GCCTGTCTCAGAAAAGCCTGTCTCA 348 283 139 Antisense
GCCTGTCTCAGAAATTTTGTTCGGA 347 283 154 Antisense
TCCCGGTCAACTTTTTGTTGACAAT 604 595 184 Antisense
TGTTGACAATGTTTTACCCTCTTCC 100 563 199 Antisense
CATACTTAGTCACCGGACTCTTGCG 149 215 230 Antisense
GACTCTTGCGGGTCCAAATGATTAT 549 373 245 Antisense
Sequence Source Affymetrix Proprietary Database