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[175391_at]

Description AV177401_rc /REP_DB=TREMBL Accession /GB=AV177401 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk528c2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 22      6grp_total > 22      4grp_total > 57      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 158.4
(-3)
P 		338.9
(3)
P 		330.9
(2.7)
P 		162.8
(-2.9)
A 		181
B 189
(-0.4)
P 		274.7
(1.5)
P 		338
(3)
P 		77.1
(-3)
A 		261
C 197.5
(-1.6)
P 		382.3
(3)
P 		374.4
(2.8)
P 		143.8
(-3)
M 		239
avr 181.6
(-1.5) 		332
(2.6) 		347.8
(3) 		127.9
(-3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 156.7
(-0.4)
P 		239
(2.4)
P 		255.6
(3)
P 		183.2
(0.5)
P 		115.1
(-1.9)
M 		83.4
(-3)
A 		172
B 295.4
(3)
P 		244.4
(1.5)
P 		193.3
(-0)
P 		159.6
(-1)
P 		126.9
(-2)
P 		92.1
(-3)
P 		203
C 206.1
(1.1)
P 		264.7
(3)
P 		233.4
(2)
P 		165.7
(-0.2)
P 		111.5
(-2)
P 		81.7
(-3)
A 		183
avr 219.4
(1.9) 		249.4
(3) 		227.4
(2.2) 		169.5
(0.1) 		117.8
(-1.8) 		85.7
(-3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 57.7
(0.2)
P 		73.6
(1.8)
P 		86.5
(3)
P 		23.8
(-3)
A 		63
B 60.3
(1.3)
P 		67.8
(2)
P 		78.3
(3)
P 		16.4
(-3)
A 		62
C 65.4
(-0.7)
P 		109.9
(1.8)
P 		130.5
(3)
P 		24.2
(-3)
M 		106
avr 61.1
(0.1) 		83.8
(1.9) 		98.4
(3) 		21.5
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 28.9
(-2.2)
P 		85
(3)
P 		55.7
(0.3)
P 		46.5
(-0.6)
P 		34.7
(-1.7)
M 		20.3
(-3)
A 		65
B 102.8
(3)
P 		81.3
(1.1)
P 		47
(-1.9)
P 		42.3
(-2.3)
P 		51.6
(-1.5)
P 		34.3
(-3)
P 		69
C 76.4
(2.5)
P 		80.8
(3)
P 		59.4
(0.6)
P 		33.3
(-2.3)
P 		36.1
(-2)
P 		27.4
(-3)
A 		53
avr 69.4
(1.6) 		82.4
(3) 		54
(-0.1) 		40.7
(-1.5) 		40.8
(-1.5) 		27.3
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22277
Sequence Type Exemplar sequence
Representative Public ID AV177401 NCBI
Target Description AV177401_rc /REP_DB=TREMBL Accession /GB=AV177401 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk528c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038624 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15757937:15761452:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15757795-15758075(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE63358 Hypothetical protein CBG07766 [Caenorhabditis briggsae] 1.0E-113
blast CAE18060 Hypothetical protein ZK678.8 [Caenorhabditis elegans] ref|NP_001025003.1| ZK678.8 [Caenorhabditis elegans] 4.0E-70
blast AAH63912 Hypothetical protein MGC76134 [Xenopus tropicalis] ref|NP_989240.1| hypothetical protein LOC394849 [Xenopus tropicalis] gb|AAH80164.1| Hypothetical protein MGC76134 [Xenopus tropicalis] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.6E-14
Sequence
Target Sequence 
>C. ELEGANS:175391_AT
tcggacttggtctcatccataacgaaggattcgacaagcactcatttgacgactttgttg
tttatcattatcagtattcgaggcactcggcgaaatatttggaatcgctatggcaaaact
ctaaaatgatattgtgaagtcctcttgtttcaccaattttttctacttttttgtcacgtg
tcatccagccatatgttctttttctctcaatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGACTTGGTCTCATCCATAACGA 468 599 15 Antisense
ACGAAGGATTCGACAAGCACTCATT 678 91 36 Antisense
GACAAGCACTCATTTGACGACTTTG 414 365 47 Antisense
GACGACTTTGTTGTTTATCATTATC 678 379 62 Antisense
CATTATCAGTATTCGAGGCACTCGG 564 215 80 Antisense
GGCACTCGGCGAAATATTTGGAATC 569 535 96 Antisense
GGAATCGCTATGGCAAAACTCTAAA 366 533 115 Antisense
TGAAGTCCTCTTGTTTCACCAATTT 36 575 149 Antisense
TCTACTTTTTTGTCACGTGTCATCC 43 615 176 Antisense
GTCATCCAGCCATATGTTCTTTTTC 452 467 194 Antisense
CCATATGTTCTTTTTCTCTCAATTA 371 271 203 Antisense
Sequence Source Affymetrix Proprietary Database