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[175390_at]

Description AV200084_rc /REP_DB=TREMBL Accession /GB=AV200084 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk556d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_highest_nonorm > 76      6grp_total > 44      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 45      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2393
1 2 3 4 range
A 1887.6
(0.8)
P 		1006.8
(-1.9)
P 		660.9
(-3)
P 		2587.3
(3)
P 		1926
B 2137.9
(0.6)
P 		909.5
(-2.5)
P 		729.2
(-3)
P 		3053.7
(3)
P 		2325
C 2036
(1.6)
P 		984.3
(-2.2)
P 		746.9
(-3)
P 		2431.8
(3)
P 		1685
avr 2020.5
(1) 		966.9
(-2.2) 		712.3
(-3) 		2690.9
(3) 		1979

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 649
1 2 3 4 5 6 range
A 1122.6
(-0.4)
P 		1223.8
(0.8)
P 		1396
(3)
P 		917.5
(-3)
P 		956.8
(-2.5)
P 		920.8
(-3)
P 		479
B 1274.4
(0)
P 		1353.7
(0.8)
P 		1566.7
(3)
P 		975
(-3)
P 		1231.6
(-0.4)
P 		1235.3
(-0.4)
P 		592
C 1410.3
(3)
P 		1190
(-0.4)
P 		1040.4
(-2.7)
P 		1087.8
(-2)
P 		1022.8
(-3)
P 		1371.5
(2.4)
P 		388
avr 1269.1
(1.9) 		1255.8
(1.6) 		1334.4
(3) 		993.4
(-3) 		1070.4
(-1.6) 		1175.9
(0.2) 		341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 687.3
(3)
P 		218.5
(-2.5)
P 		172.8
(-3)
P 		378.7
(-0.6)
P 		515
B 681.8
(3)
P 		224.6
(-2.3)
P 		169
(-3)
P 		650.7
(2.6)
P 		513
C 674
(3)
P 		283
(-2.7)
P 		260.3
(-3)
P 		410
(-0.8)
P 		414
avr 681
(3) 		242
(-2.5) 		200.7
(-3) 		479.8
(0.5) 		480

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 206.9
(-3)
P 		435.2
(3)
P 		304
(-0.4)
P 		232.7
(-2.3)
P 		288.7
(-0.9)
P 		224.2
(-2.5)
P 		228
B 443.4
(1.6)
P 		450.6
(1.8)
P 		380.4
(0)
P 		258.3
(-3)
P 		500.4
(3)
P 		460.7
(2)
P 		242
C 522.7
(3)
P 		363.1
(-0.2)
P 		264.8
(-2.1)
P 		218.7
(-3)
P 		331
(-0.8)
P 		459.1
(1.7)
P 		304
avr 391
(2.2) 		416.3
(3) 		316.4
(-0.3) 		236.6
(-3) 		373.4
(1.6) 		381.3
(1.8) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20515
Sequence Type Exemplar sequence
Representative Public ID AV200084 NCBI
Target Description AV200084_rc /REP_DB=TREMBL Accession /GB=AV200084 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk556d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026920 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-16) (flp-16) mRNA, complete cds. 11/11 None
F15D4.8 ENSEMBL cdna:known chromosome:CEL140:II:13235202:13237227:1 gene:F15D4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038514 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13236883-13237163(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-16
Ensembl F15D4.8
Entrez Gene 174967 Entrez gene
SwissProt Q7YX32 EMBL-EBI
WormBase CE34815 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17795 Hypothetical protein F15D4.8 [Caenorhabditis elegans] ref|NP_001022091.1| FMRF-Like Peptide family member (flp-16) [Caenorhabditis elegans] 3.0E-45
blast CAE59445 Hypothetical protein CBG02820 [Caenorhabditis briggsae] 2.0E-34
blast AAT76297 FMRFamide-related peptide FLP-16 precursor [Teladorsagia circumcincta] 5.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022091.1 1 5-27
F15D4.8 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:175390_AT
agcgcagacattcgtaagattcggcaagagaggtcaaacctttgtacgattcggacgaag
tgctccgttcgagcaataaatgtgctcgtttttgtgtccgagagagtggcgggtcgactt
catcagatggcctaaaattcctagtatttcctaataatcccttgagccccctaaacgtgt
taattttcataacactttctcagcccaaaaattccagtattttgtcttatgtcccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGCAGACATTCGTAAGATTCGGC 149 81 23 Antisense
GATTCGGCAAGAGAGGTCAAACCTT 293 393 40 Antisense
GTCAAACCTTTGTACGATTCGGACG 264 463 55 Antisense
GATTCGGACGAAGTGCTCCGTTCGA 302 433 70 Antisense
GTGTCCGAGAGAGTGGCGGGTCGAC 341 487 116 Antisense
GGCGGGTCGACTTCATCAGATGGCC 239 541 130 Antisense
GATGGCCTAAAATTCCTAGTATTTC 149 407 148 Antisense
TATTTCCTAATAATCCCTTGAGCCC 181 661 167 Antisense
TTTTCATAACACTTTCTCAGCCCAA 127 677 206 Antisense
TTCTCAGCCCAAAAATTCCAGTATT 3 689 219 Antisense
TCCAGTATTTTGTCTTATGTCCCGT 68 589 235 Antisense
Sequence Source Affymetrix Proprietary Database