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[175389_at]

Description AU114747_rc /REP_DB=TREMBL Accession /GB=AU114747 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk727h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 09      4grp_total > 11      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 168.8
(-3)
P 		181
(-2.6)
P 		180.1
(-2.6)
P 		339.1
(3)
P 		170
B 215.5
(-0.1)
P 		162.5
(-3)
P 		164.2
(-2.9)
P 		270.7
(3)
P 		108
C 199.9
(-1.3)
P 		228.9
(-0.3)
P 		154.1
(-3)
P 		317.3
(3)
P 		163
avr 194.7
(-1.8) 		190.8
(-2) 		166.1
(-3) 		309
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 236.5
(3)
P 		136.8
(-2.3)
P 		161.7
(-1)
P 		143.7
(-2)
P 		196.6
(0.9)
P 		124.5
(-3)
P 		112
B 201.6
(3)
P 		167.6
(0.6)
P 		168.7
(0.6)
P 		187.3
(2)
P 		117.8
(-3)
P 		135.3
(-1.7)
P 		84
C 166.8
(0.8)
P 		163.3
(0.5)
P 		187.1
(3)
P 		175.5
(1.8)
P 		140.5
(-2)
P 		130.9
(-3)
P 		56
avr 201.6
(3) 		155.9
(-0.8) 		172.5
(0.6) 		168.8
(0.2) 		151.6
(-1.2) 		130.2
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 61.5
(3)
P 		39.3
(-3)
P 		47.1
(-0.9)
P 		49.6
(-0.2)
P 		22
B 68.7
(3)
P 		40.1
(-2.6)
P 		38.1
(-3)
P 		57.7
(0.8)
P 		31
C 66.2
(3)
P 		65.8
(2.8)
P 		53.7
(-2.9)
P 		53.5
(-3)
P 		13
avr 65.5
(3) 		48.4
(-2.3) 		46.3
(-3) 		53.6
(-0.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 43.6
(-0.2)
P 		48.6
(0.8)
P 		35.2
(-2)
P 		36.4
(-1.7)
P 		59.3
(3)
P 		30.3
(-3)
P 		29
B 70.2
(3)
P 		55.8
(0)
P 		41
(-3)
P 		49.6
(-1.2)
P 		47.9
(-1.6)
P 		50.5
(-1)
P 		29
C 61.8
(3)
P 		49.8
(0.3)
P 		47.6
(-0.2)
P 		35.3
(-3)
P 		45.5
(-0.7)
P 		43.8
(-1.1)
P 		27
avr 58.5
(3) 		51.4
(0.6) 		41.3
(-2.7) 		40.4
(-3) 		50.9
(0.5) 		41.5
(-2.6) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22274
Sequence Type Exemplar sequence
Representative Public ID AU114747 NCBI
Target Description AU114747_rc /REP_DB=TREMBL Accession /GB=AU114747 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk727h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F53H4.4 ENSEMBL cdna:known chromosome:CEL140:X:15866519:15868614:1 gene:F53H4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15868317-15868604(+) 100.0 100.0
Public Domain and Genome References
Ensembl F53H4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03137 Hypothetical protein F53H4.4 [Caenorhabditis elegans] ref|NP_510609.1| F53H4.4 [Caenorhabditis elegans] 1.0E-158
blast CAE69729 Hypothetical protein CBG16000 [Caenorhabditis briggsae] 1.0E-106
blast CAE69731 Hypothetical protein CBG16002 [Caenorhabditis briggsae] 2.0E-61
Sequence
Target Sequence 
>C. ELEGANS:175389_AT
tcctgaatctcatacaaagctctactgtgtattgtgtgttttttgtttgctgttcctagt
ctactagattcgtctcatttttcgacctctatcattcttattaacatttgcaattatttt
gcagtcaccaaatctccctgctgctggcacatcacatttaaaaagtctttatgcctgcct
acgccttatatttttttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGAATCTCATACAAAGCTCTAC 509 593 40 Antisense
AAAGCTCTACTGTGTATTGTGTGTT 666 123 55 Antisense
TGTGTGTTTTTTGTTTGCTGTTCCT 367 555 72 Antisense
TTGTTTGCTGTTCCTAGTCTACTAG 570 705 82 Antisense
CTAGTCTACTAGATTCGTCTCATTT 426 225 95 Antisense
TAGATTCGTCTCATTTTTCGACCTC 558 653 104 Antisense
TTTTCGACCTCTATCATTCTTATTA 285 677 118 Antisense
TTTTGCAGTCACCAAATCTCCCTGC 164 677 156 Antisense
TGCTGCTGGCACATCACATTTAAAA 140 581 178 Antisense
AAAAAGTCTTTATGCCTGCCTACGC 116 127 199 Antisense
CTGCCTACGCCTTATATTTTTTTGT 352 235 214 Antisense
Sequence Source Affymetrix Proprietary Database